Geminocystis sp. NIES-3709: GM3709_3147
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Entry
GM3709_3147 CDS
T04142
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
gen
Geminocystis sp. NIES-3709
Pathway
gen03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gen00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GM3709_3147
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gen03021
]
GM3709_3147
03400 DNA repair and recombination proteins [BR:
gen03400
]
GM3709_3147
Enzymes [BR:
gen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GM3709_3147
Transcription machinery [BR:
gen03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GM3709_3147
DNA repair and recombination proteins [BR:
gen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GM3709_3147
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
BAQ66382
LinkDB
All DBs
Position
3538842..3542108
Genome browser
AA seq
1088 aa
AA seq
DB search
MRTQELLPDLIEIQRSSYKWFLEHGIIEELNSFTPITDYAGKLELHFIGEKYRLKEPKYY
IEEAKKRDASYSVQVYVPTLLLNKETGERKEQEVFIGDLPLMTDRGTFLINGAERVIVNQ
IVRSPGVYFKSELDKNGKRTYSASVIPNRGAWLKFETDKHGVVWVRIDKTRKISAQVLLK
AMGLTDREILDRLRHPEFYEKTLEKEGNPSTDDALMELYRKLRPGEPPTVSGGQALLETR
FFDPKRYDLGKVGRYKMNKKLRLNVAENIRVLTVEDILCVVDYLINLEFDIGKVDDIDHL
GNRRVRSVGELLQNQVRVGLSRLERIIRERMTVGDPNTLTPAALVNPKPLVAAIKEFFGS
SQLSQFMDQTNPLAELTHKRRISALGPGGLSRDRAGFAVRDIHPSHYGRICPVETPEGPN
AGLIGSLATYARVNEYGFIATPYYKVENGKVRWDLPPEYLTADEEDDKRVAPGDLSTDEN
GVILGESVPIRYRQEFSTTSPTQVDYVAVSPVQIVSVATSMIPFLEHDDANRALMGSNMQ
RQAVPLLRAERPLVGTGLEGQAARDSGMVIVSRDYGTITYADAKKIKLKTKDNSEIVYNL
QKYERSNQDTCLNQRPLVDEGEDVVPGQVLADGSATEGGELALGNNITVAYMPWEGYNYE
DAILISERLVQEDIYTTIHIEKHEIEARQTKLGPEEITREIPNVGEDALLNLDEQGIIRV
GAWVESGDILVGKVTPKGESDQPPEEKLLRAIFGEKARDVRDNSLRLPNGEKGRVVYVRV
FTREQGDELPPGANMVVRVYIAQKRKIQVGDKMAGRHGNKGIISRILARQDMPYMPDGSP
VDIVLNPLGVPSRMNVGQVFECLLGWAGEQLGYRFKMTPFDEMYGEEASRNTVNDLLREA
ARKPGKEWVFDEDNPGKIQLYDGRSGEPFDRPVTVGKAYMLKLVHLVDDKIHARSTGPYS
LVTQQPLGGKAQQGGQRFGEMEVWALEAYGAAYTLQELLTVKSDDMQGRNEALNAIVKGR
TIPRPGTPESFKVLLRELQSLGLDVSVHKVLDGQEEVEINLMDSGNRTPKRPTYENLASL
GQDDDDEY
NT seq
3267 nt
NT seq
+upstream
nt +downstream
nt
atgagaacccaagaactgttacctgatttaatcgaaattcaacgctctagctacaagtgg
tttttagagcatggtattattgaagaactcaacagttttacccctatcacagactacgca
ggtaaacttgaattacacttcatcggcgaaaaatatcgtctcaaagaacctaagtactat
attgaagaggcaaaaaaaagagatgctagttactcagtacaagtttatgtccctacatta
ctattaaacaaagaaactggcgaacgtaaagagcaagaagtttttattggtgacttacct
ttgatgactgatagaggtacatttttgattaatggtgcagaacgagtcatagtcaatcaa
atcgtacgatctccgggggtctattttaagtcagaattagacaaaaacggtaaaagaacc
tactccgcttctgttattcccaaccgaggagcgtggttaaaatttgaaactgacaaacac
ggcgttgtgtgggtaagaattgacaaaactcgcaaaatctccgcccaagtactcttaaaa
gccatgggattaaccgatcgtgaaatactcgatcgactccgtcaccctgaattttacgaa
aaaaccctcgaaaaagaaggtaatcctagtactgatgacgctttgatggaactataccgc
aaactacgtcccggtgaaccccctaccgtaagcggtggacaagcattgttagaaacccgt
ttctttgatcctaaacgctatgatttaggcaaagttggacgttacaaaatgaacaaaaaa
ctgcgtcttaatgtagcggaaaacatcagggttttaactgttgaagatattttgtgcgtg
gttgactatttaattaaccttgaatttgacatcggtaaagttgacgatattgatcacctc
gggaatcgtcgagtgcgcagtgtgggagaattacttcaaaaccaagttagagttggttta
tcccgtttagagcgaattattcgggaaagaatgactgttggtgatcccaataccttaact
ccggcggctcttgttaacccaaaacctttagtagcagccattaaagagtttttcggatct
tcccagttatcccaattcatggatcaaacaaatcccttggcggaattgacccacaaacgt
cgtatttctgctttaggccctggtggtttaagtcgtgatcgtgctggttttgccgtgcgt
gatattcaccctagccattacggacgtatttgtcccgtagaaactcctgaaggccccaac
gcagggttaatcggttcattagccacctatgctcgtgttaacgaatatggatttatcgcc
actccttactataaagtcgaaaacggcaaagtacgctgggatttaccgccagaatatctc
actgctgatgaagaagacgataaaagagttgcccccggagatttatctaccgatgaaaat
ggtgtaatcttaggagaaagtgtacctattcgttaccgtcaagaattttctaccacttca
ccaacgcaggtggactatgtagccgtttctcctgtgcaaatcgtttctgtggcgacttcc
atgattcctttcttagagcatgatgacgctaaccgtgccttgatgggatcgaatatgcaa
cgtcaagcagtacccttattacgagcagaacgtcccttagtaggtacaggtttggaaggt
caagccgcacgggattcaggaatggtcattgtttcccgtgattatggtactatcacctac
gctgatgcgaaaaaaatcaagctaaaaacaaaagataatagtgaaattgtttataatctc
caaaaatacgaacgatcgaaccaagatacttgtttaaatcaacgtcctttagtcgatgaa
ggagaagatgttgtacccggacaagtattagccgatggttctgctaccgaaggcggagaa
ttagcattaggaaataatatcaccgtagcatatatgccatgggaaggttataactacgaa
gatgctattttaatcagtgagcgcttagttcaagaagatatttacactaccattcacatt
gaaaaacatgaaatagaagcccgtcaaacaaaacttggccctgaagaaattactcgtgaa
attcccaacgttggggaagatgcccttttaaaccttgatgaacagggtattattcgtgtg
ggtgcttgggtagaatcaggagacattttagtagggaaagttactcctaaaggagaatca
gatcaaccccctgaagaaaaattattacgagccatttttggagaaaaagccagagatgta
cgggataattccttgcgtcttcctaacggagaaaaaggaagggttgtttatgtccgagtt
tttacccgtgaacaaggagacgaattgccacctggtgcaaacatggtggttcgagtttat
attgctcaaaaaagaaaaatccaagtcggggataaaatggcaggacgacatggtaataag
ggaattatttctcgtattttggctcgtcaagatatgccttatatgcctgatggaagtcct
gttgacattgtgttaaatcctctgggtgtgccttctcggatgaacgtgggacaagtattt
gaatgtcttttaggttgggctggagaacagttgggctatcgtttcaaaatgacacctttt
gacgagatgtatggtgaagaagcatcccgtaatacggttaacgatcttttacgagaagcg
gctagaaaaccgggcaaagaatgggtatttgatgaagataatccgggtaaaattcagttg
tatgatggtcgttctggtgaacccttcgatcgaccagttactgtgggtaaagcctatatg
ctcaaattagtccacttggttgatgataaaattcatgctcgatcaacaggcccttactct
ctggttacacaacaacctctcggtggtaaagcacaacaagggggtcaaagattcggagaa
atggaagtatgggcattagaagcctatggtgcggcctataccttacaagagttactaacc
gttaaatctgatgatatgcaaggacgtaatgaagccttaaatgcgatcgtcaaaggcaga
acaattcctcgtcccggtactcctgaatctttcaaagtactgttgagagaattacaatct
ttagggttagatgtatctgtccataaagttttagatggacaagaagaagtagaaattaac
cttatggattcaggtaatcgtacccccaaacgtcctacttatgaaaatctagctagttta
ggtcaagacgacgacgatgaatactaa
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