Gemella sp. ND 6198: CG018_07140
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Entry
CG018_07140 CDS
T05584
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
geq
Gemella sp. ND 6198
Pathway
geq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
geq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CG018_07140 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
geq03021
]
CG018_07140 (rpoB)
03400 DNA repair and recombination proteins [BR:
geq03400
]
CG018_07140 (rpoB)
Enzymes [BR:
geq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CG018_07140 (rpoB)
Transcription machinery [BR:
geq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CG018_07140 (rpoB)
DNA repair and recombination proteins [BR:
geq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CG018_07140 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
AXI27192
LinkDB
All DBs
Position
complement(1568461..1572258)
Genome browser
AA seq
1265 aa
AA seq
DB search
MQKVKFGKHRQRRSYARISEVIDLPDLIEIQTLSYEKFLETGLKEVFRDVSPIEGNNEKL
SLEFIDYKLGTPKYNVDESKEHDATYSAPLRVRVRLINKERDEIKEQEVFMGELPLMTET
GTFIINGAERVIVSQLVRSPSVYFTEDDKLKVKNIPNAYKTTVIPNRGAWLEFEKDIKGL
AYARIDRTRKIPLTTLIRALGFNSDEEIIRLFGEDAELLNTLEKDENQDVGTALKVIYDK
LRPGEPANVETAKSTLYGRFFDPRRYDLAKVGRYKLNNKLHVAERLENQILVEPIVDTET
GEILVEKGIKLTREILDNIHEELETTANIREFDMNESLDGSDSLKLQLFKIVNQVKVGND
YNVDELTADQVLHVIGNASPDKDILTLTIADIIASINYYLLLIRNRRNDDSFEYELIGRV
DDIDHLGNRRLRCIGELLQNQIRVGISRMERVVRERMSIQDTNEITPQQLINVRPVTAII
KEFFGSSQLSQFMDQTNPLSELTHKRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIE
TPEGPNIGLINSLSSFARINEYGFIMTPYRKVEVDNEGRPYVTENVQYLTADQEDKYVVA
QSNSNVDENGYFLDDEVVCRFRGDNTIKPREMMNFMDVSPKQVVSAATACIPFLENDDSN
RALMGANMQRQAVPLMVTEAPFVGTGMEHLAARDSGAAVIAKYRGIVEYVDGAKIKVRRL
EILDGNEIKGELDTYIVHKFVRSNHSTSYNQKPIVKVGDRVEPKDILADGPSMDKGELAL
GKNLVVAFVNWDGYNYEDAVIMSERLVKDDVYTSIHLEEYETEARDTKLGPEEITREIPN
VGENALKNLDSRGIIRIGAEVKDGDILVGKVTPKGLTEQTPEEKLLYAIFGAKSKEVRDT
SLRVPHGADGVVADVKIFKREDGAELANGVNELVRVFIVQKRKIRVGDKMAGRHGNKGVI
SNILPEEDMPYLPDGTPVDVMLNPLGVPSRMNIGQVLELHLGMAAKQLGIHVATPVFDGA
SDDDVWSTVAEAGMAKDAKTVLYDGRTGEPFDSRVSVGVMYMIKLAHMVDDKLHARSIGP
YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDTNGRIKTYEVIVK
GENIPRPGVPESFRVLMKELQALGMDFRVMDNDDNEVDMGDIDLGDTIDFHTGLGHLHEK
KEDEVKNEETDEDVDIDTEDEENEEVDENSGYQSLADLLLSNNDEYDDVEDIEDEEIEED
FDNEK
NT seq
3798 nt
NT seq
+upstream
nt +downstream
nt
ttgcaaaaagttaaatttggtaagcacagacaaagacgtagctatgcgagaatttcagaa
gtaatcgatttaccagacttaatagaaattcaaacgttatcttatgagaaatttttagaa
accggtttaaaagaagtttttagagatgtttctccaattgaaggtaataatgaaaaatta
agtttagaatttattgattataaacttggaactcctaagtataatgttgatgaatcaaaa
gaacatgatgctacatattcagcaccactacgtgtaagagttcgtttgattaataaagaa
cgtgatgaaattaaagaacaagaagtgtttatgggtgaactaccgctaatgacggagaca
ggaacattcataataaacggtgcagaacgtgttatcgtttcacaattagttcgatcacct
tctgtgtattttacggaagatgataaattaaaggtaaaaaatattcctaatgcatataaa
acaactgtgattcctaacagaggagcttggttggaatttgagaaagatattaaaggtttg
gcatatgccagaatagatagaacaagaaaaattccgctaacaacacttatcagagccttg
ggatttaattcggatgaggaaatcatcagattattcggtgaagatgctgagcttcttaat
acattggaaaaagatgagaatcaggatgtcgggacagctttaaaagtaatctatgataaa
cttcgtcccggagaacccgcgaatgttgaaacagctaaatctacattgtatggacgtttt
tttgatccgcgtcgttatgatttggcaaaggtaggaagatataaacttaataataaactt
catgtcgctgaaagattagaaaatcaaattttagtagagccgattgttgatactgaaaca
ggtgaaattttagtagaaaaaggtattaaattgactcgtgaaattttagataatattcat
gaggaattagaaactacagctaatataagagaatttgatatgaatgaatcgcttgacgga
agtgacagtttaaaattacagttatttaaaattgtgaatcaggttaaagttggaaatgat
tacaatgttgatgagttgacagcagatcaagtattacatgttataggtaatgcttcaccg
gataaagatattttaacattaactattgccgatattatagcaagtattaattactactta
ttattaatcagaaatagaagaaatgatgattcgtttgagtatgaattaataggtagggtt
gatgatattgatcatcttggtaatcgtcgacttcgttgtataggtgaattacttcaaaat
caaattcgtgtcggtatttctcgtatggagcgtgtcgttagagaaagaatgagtattcaa
gatactaatgaaattacaccgcaacagttgataaatgttagaccggttactgcgattatt
aaagagttttttggaagttctcaattatcacaatttatggatcaaaccaatccgttaagt
gagcttactcacaaacgtagattgtctgcgcttggacctggtggtttaacgagagaacgt
gccggaatggaagttcgtgacgtccattattctcactatgggcgtatgtgcccgattgaa
acgccggaaggaccaaacattggcttaattaactcactatcttcattcgcaagaattaat
gagtatggttttattatgactccatatagaaaagtagaagttgataatgaagggcgacct
tatgttactgaaaatgttcaatatttaacagcagatcaggaagataaatatgtggttgca
caatctaactcgaatgtagatgaaaatggatatttcttagatgatgaagttgtttgtcgt
tttagaggagataatacgattaaacctagagaaatgatgaacttcatggatgtatcacct
aaacaggtagtatcagcagctacagcttgtattccatttttagaaaacgacgactctaac
cgtgcgcttatgggtgcaaacatgcaacgtcaagcggtacctttgatggtaactgaagca
ccgtttgttggaaccggtatggagcatttagcagcacgtgattcaggagcagcagttata
gctaaatatcgtggtattgttgaatatgtggatggtgctaaaataaaggtacgacgactt
gaaattcttgacggaaatgaaattaaaggtgagttagatacatatattgtacataaattt
gtacgttctaatcatagtacatcatataatcaaaaacctattgttaaagtaggagacaga
gttgaaccgaaagatattcttgctgacggaccatctatggataaaggagaattagcatta
ggtaaaaacttagtggtagcatttgttaactgggacgggtacaattatgaagatgctgtt
attatgagcgaacgtcttgttaaagatgatgtttatacttctattcatttagaagaatat
gaaacagaagcaagagatacaaaacttggaccggaagaaatcacacgtgagatacctaat
gtaggagaaaatgctcttaaaaacttggattcacgcggtattatccgtataggtgcggaa
gtaaaagatggggacattcttgtcggtaaagtaacacctaaagggttaacagaacaaaca
ccggaagaaaaactgttatacgcaattttcggtgcaaaatctaaagaagtacgtgatact
tcattgcgtgtgccacatggtgctgacggagtagtagcggatgttaaaattttcaaacgt
gaagatggtgcggagttagccaatggcgttaacgaattggttagagtatttattgttcaa
aaacgtaaaattcgtgttggtgataaaatggctggtcgtcatggaaataaaggggttatc
tcaaatattttacctgaagaagatatgccttatttaccggatgggacgcccgttgatgtt
atgttaaatccacttggagtaccgtcacgtatgaacattggacaagtattagaacttcat
ttaggtatggcggctaaacaactcggtatccacgtagcgacaccggtgtttgacggtgct
agtgatgatgatgtttggtcaactgtggcagaggccggtatggcaaaagatgctaagacg
gttctttatgacgggcgtaccggtgaaccgtttgatagtcgtgtttcagttggagttatg
tatatgattaaacttgctcacatggttgatgataaacttcatgcacgttcaattggtcca
tattcattggtaacgcaacaacctcttggaggtaaagcacaatttggtggacaaagattt
ggtgagatggaggtatgggcattagaagcatatggtgcagcttatacacttcaagaaatc
ttgacttacaaatcagatgatacgaacggtcgtattaaaacttatgaagttattgttaaa
ggtgagaatattccgcgtcccggagtaccggaatcgttccgtgttcttatgaaagaactt
caagccttaggtatggactttagagtaatggataatgatgataatgaagtggatatgggt
gatatagacctaggcgatactatagattttcatacaggtttaggacacttacatgaaaaa
aaagaagatgaagttaagaatgaagaaactgatgaagatgtagatattgatactgaagac
gaagaaaatgaggaagttgatgaaaatagcggttatcaatcactagctgacttattgctg
tcaaataatgatgaatatgatgatgtagaagatatagaagatgaagaaatcgaagaagat
tttgataatgaaaaataa
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