Geothrix oryzae: GETHOR_15360
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Entry
GETHOR_15360 CDS
T09137
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
gex
Geothrix oryzae
Pathway
gex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GETHOR_15360 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gex03019
]
GETHOR_15360 (rne)
03009 Ribosome biogenesis [BR:
gex03009
]
GETHOR_15360 (rne)
Enzymes [BR:
gex01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GETHOR_15360 (rne)
Messenger RNA biogenesis [BR:
gex03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GETHOR_15360 (rne)
Ribosome biogenesis [BR:
gex03009
]
Prokaryotic type
rRNA processing factors
GETHOR_15360 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
BDU69435
UniProt:
A0ABM8DR06
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All DBs
Position
complement(1742230..1744461)
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AA seq
743 aa
AA seq
DB search
MNPKKTMMINATDPEEIRVATLIDGVLFDYDVEFLHNEKIKGNLYKARVVRVDTSLQAAF
VHFGGQKNGFLPLGELPREMSGDGRRGRIQDVLQRDQEILVQAVREELGSKGAMMTGQIS
LAGRYLVITPGNPVNGISRKIESTEERRHFKQLVDTLEIPEDIGVIVRTASLGVTKEDFE
RDLEYLLDTYKEVLNRYKHRHGPGLVWQEDDVVTRTLRDTFSADVEEVQIDDLDTFHAAQ
SFFKRTMPQYLEVLKHYTGKKPLFTRYQLEEQIDRVYGRKVPLPSGGALVLDQTEALVAI
DVNSGKTSGDGVEDMAFKTNMEAAEEVARQLRLRDLAGLIAIDFIDMKRESHIRSVQDKL
VDCLKADKARMEVGKINRFGVLVMTRQRIRPSLQHVNHESCPTCAGTGKVKTIEAMALSV
VRKLHGILAKGGIGEIRVKLAPAIAAAVLNEKRSDLTQMEEESGAKILILADWSMGYGEM
AAEIERAEEAPAEKPAAAKPHREKGAPEEETVVLGGDSPISFDKALGVHGEGPKEAKKEA
FKYDRRDLQRAALDERERLRALFESAKPEDEESEEGTEESGDEPKGEGAKRKRRRRRRKG
GAERNGEGTTPVETREDRSEPAPQPEPPKVTADLVASLLTPSPRPRIGAAARAVAAPEAP
VDPVKDLAKPKRTPRAKVTSAPEPAAAPTPVSEPAVTAEVPAKKKAAPKAKAPKAPAKKA
DKAETAEEKPKPKTTRAKKAKAE
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
ttgaatcccaagaaaacgatgatgatcaacgccaccgatccggaagagatccgcgtggcc
accctgatcgacggtgtcctgttcgattacgatgtcgaatttctccataacgaaaagatc
aaaggcaacctctacaaggccagggtcgtccgcgtggacaccagcctccaggccgccttc
gtccacttcggcggtcagaagaacggcttcctgcccctcggggagctcccccgggagatg
agcggcgacggtcgccggggccgcatccaggatgtcctccagcgggaccaggagatcctg
gtccaggccgtgcgcgaggaactgggcagcaagggcgccatgatgaccggccagatcagc
ctggcgggccgctacctggtgatcacccccgggaaccccgtcaacggcatcagccgcaag
atcgagagcaccgaagagcgccgccacttcaagcagctcgtcgacaccctggagattccc
gaggacatcggcgtgatcgtccgcaccgccagtctgggcgtgacgaaggaagacttcgag
cgcgacctggagtacctgctggacacctacaaggaagtgctgaaccgctacaagcaccgt
cacggccccgggctcgtgtggcaggaggacgatgtcgtcacccgcacgctgcgcgacacc
ttcagcgccgatgtggaggaagtgcagatcgacgacctggacaccttccatgccgcccag
tccttcttcaagcgcaccatgccccagtacctcgaggtgctgaagcactacacgggcaag
aagcccctcttcacccgctaccagctggaagaacagatcgaccgcgtctacggccggaag
gtgcctctgcccagcggcggtgccctggtgctggatcagaccgaggccctggtggccatc
gatgtgaacagcggcaagacctccggcgacggcgtggaggacatggccttcaagaccaac
atggaggccgcggaggaagtggcccgccagctgcgcctgcgcgatctggccggcctcatc
gccatcgacttcatcgacatgaagcgcgagtcccacatccgctccgtccaggacaagctg
gtggactgtctcaaggccgacaaggcgcgcatggaggtggggaagatcaaccgcttcggc
gtgctggtcatgacccgccagcgcatccgcccgagcctccagcatgtgaaccacgagtcc
tgccccacctgcgccggcaccggcaaggtgaagaccatcgaggcgatggcgctctccgtg
gtccgcaagctccatggcatcctggccaagggcggcatcggggagatccgcgtgaaactg
gccccggccatcgccgccgcggtgctcaatgagaagcgcagcgacctgacgcagatggag
gaggagagcggcgcgaagatcctcatcctggccgactggtccatgggctatggcgagatg
gccgccgagatcgagcgggcagaggaggccccggccgagaagcctgccgctgccaagccg
caccgggagaagggcgccccggaagaggagacggtggtgctgggtggcgacagccccatc
tccttcgacaaggcgctgggtgtgcatggcgaaggtcccaaggaagccaagaaggaagcc
ttcaaatacgaccgccgcgatctgcagcgggcggccctggatgaacgagagcgcctgcgg
gccctgttcgagagcgccaagcccgaggacgaggagtccgaggaggggaccgaggaatct
ggcgacgagcccaagggcgaaggtgccaagcgcaagcgccgccggcgtcgccgcaagggc
ggagccgagcggaacggcgagggcacgaccccggtcgagacccgcgaggaccgatcggaa
cccgcccctcagcccgaacctccgaaggtcacggcggacctggtggccagcctgctgacc
cccagtccccgtccgcggatcggcgccgcggctcgggccgtggctgcgcccgaagcgccc
gtggacccggtcaaggatctggccaagcccaagcgcactccccgcgcgaaggtaacctcg
gcgcccgaacccgccgcggctcccactcccgtttccgagccggccgtgacggcggaagtt
cctgccaagaagaaggccgcgcctaaagccaaggcccccaaggcgcccgccaagaaggcc
gacaaggccgaaacggcggaagaaaagcccaagcccaagacgacccgggccaagaaggcc
aaggccgagtag
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