Geosporobacter ferrireducens: Gferi_17350
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Entry
Gferi_17350 CDS
T04493
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
gfe
Geosporobacter ferrireducens
Pathway
gfe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gfe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Gferi_17350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gfe03021
]
Gferi_17350
03400 DNA repair and recombination proteins [BR:
gfe03400
]
Gferi_17350
Enzymes [BR:
gfe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Gferi_17350
Transcription machinery [BR:
gfe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Gferi_17350
DNA repair and recombination proteins [BR:
gfe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Gferi_17350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DUF5887
Motif
Other DBs
NCBI-ProteinID:
AOT71160
UniProt:
A0A1D8GJR7
LinkDB
All DBs
Position
3706082..3709795
Genome browser
AA seq
1237 aa
AA seq
DB search
MPHPIKVGRKTRMSYSSIDEVLDMPNLIEIQRRSYEWFLREGLREVFEDISPIQDYTGNL
ILEFIDYSLDGEPKYEVEESKERDVTYAAPLKVKVRLINKETGEVKEQEVFMGDFPLMTD
TGTFIINGAERVIVSQLVRSPGPYYAEQVDRTGKRLYSTTLIPNRGAWLEYETDSNDVIS
VRVDRTRKQPMTALLRALGFGTDAEILQLLGEDERLIHTLDKDNTKSQEEGLLEIYKKLR
PGEPPTVESARSLLDSLFFDPKRYDLAKVGRYKFNKKLGLVNRISGFKAAEAVVNASTGE
IYVEEGHKIDRDTAIMIENAGIKAVNILGDDGKIVKVIGNHFVDIREYISFNIDGLNIET
KVHYPVLREILDTYKLENELREALKERSRELSPKNIIIDDIVASISYVLSLAHGVGEIDD
IDHLGNRRLRSVGELLQNQFRIGLSRMERVVKERMTIQDIDVITPQALINIRPVAASIKE
FFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETP
EGPNIGLIGSLTTYARINEYGFIESPYRKVDKKRGVVTEKIDYLTADEEDKFIVAQANEP
LDEEGRFVNRRVTSRTRKGDIDVVPQDEVDYMDVSPKQMVSVATAMIPFLENDDANRALM
GSNMQRQAVPLLQTDAPIIGTGMEFVAAKDSGTVILAKNAGIIERVSADEIIVKRDDGQG
RDKYKLLKFKRSNQGTCINQRPIVSKGEHVEKGETIADGPSTDKGEIALGRNLLIGFMTW
EGYNYEDAILLNERLVMEDALTSIHIEEYEAEARDTKLGPEEITRDIPNVGEEALRDLDE
RGIIRIGAEVNSGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGESGI
IVDVKVFTRENGDELPPGVNILVRCYIAKKRKINVGDKMAGRHGNKGVISRVLPEEDMPF
LADGTPLQVVLNPLGVPSRMNIGQVLEIHLGLAAKKKGWLVATSVFDGADEQDIREVLKE
CGYPEDGKLVLYDGRTGMPFDNRVTVGYMYMLKLHHLVDDKIHARSTGPYSLVTQQPLGG
KAQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDVVGRVKTYESIVKGENIPEPGVPE
SFKVLIKELQSLALDVKVLTEEDAEIEIRESVEDDISDLNVILDGEEYSVYEEDDAVEEK
EDADVLDDFDTEDLVQDEDYASHEEYSDYDEYEDDDF
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atgccacatcctattaaggtcggaagaaaaaccagaatgagttattccagtatcgacgaa
gtattagatatgccaaatttgattgaaattcaaagaagatcctatgaatggtttttaaga
gaaggtttaagggaggtttttgaagatatttcaccaatccaggactatactggaaatcta
attttagagtttattgactattctcttgatggagaaccaaagtacgaggtggaagaaagt
aaagagcgtgatgttacctatgctgctcctttgaaagtaaaagttcgcctaattaataaa
gaaacaggcgaggtaaaggaacaagaagtttttatgggtgatttcccactcatgaccgat
acagggacttttattataaacggtgcagagcgggtaattgtaagccagttggtacgttca
cctggaccttattatgcagaacaagtggacagaaccggaaagcgactctattctaccaca
ttaattcctaatcgtggcgcatggttagagtatgaaacagattcgaatgatgtcatttct
gttcgcgtagacagaacaagaaaacagccaatgacagcattgttaagagctctgggcttc
ggtactgatgcagaaatactgcagctattgggagaggatgaaagacttatccatacattg
gataaagacaatacaaaatcccaggaagaaggcttattggagatttataaaaagctaaga
cctggggaaccaccaacggtggaaagtgcaagatctttgttggattccttgttttttgac
ccaaaacggtatgacttagcaaaggttggccgctataagtttaataaaaaactaggatta
gtcaatcgaatctcaggatttaaagcagcggaagctgttgtaaacgctagtactggtgaa
atttacgtagaagaaggtcacaaaattgatcgagatacagccatcatgattgaaaatgca
ggcattaaagcagtgaatattctcggcgacgacggaaaaattgttaaagtaattggaaac
cactttgtagatattagagaatacatatcctttaatatagatggattaaatatcgagacg
aaagttcactatcctgtattacgagaaatcctggatacatataaactagaaaacgaacta
agagaagcgctaaaagaaagaagcagggaattgtcacctaagaatattattattgatgat
atcgttgcttctattagttatgttctcagtttagcccacggagtaggagaaattgatgat
atcgatcacctcggaaacagaagattacgttctgtaggcgagcttttgcaaaaccaattt
agaataggtctatctaggatggaaagagttgttaaagagagaatgaccattcaagatatt
gatgtaattacaccgcaggcattaatcaatattaggccggtcgctgcgtctataaaagag
ttttttggaagcagccagttgtctcaatttatggatcaaaccaatcctttagcagaattg
acccataagagaagattatctgctcttggaccgggcggtctttcaagggaacgtgcaggt
tttgaggtgcgtgacgttcaccattcccactatggccgtatgtgtccaattgaaacccct
gaaggtccgaacatcggtttgattggttctctaacaacttacgcaagaatcaatgaatat
ggttttattgaatctccataccggaaggtagataaaaaaagaggggttgtaacggagaag
attgactatctaaccgctgatgaagaagataaattcattgttgcacaggccaatgagccg
ctagatgaagaaggacgatttgttaaccgtagagtaacttcaagaacgcgtaagggagat
atcgacgtagttcctcaggatgaagtagactacatggatgtatcaccgaagcagatggtt
tctgtagctacagctatgattccgttccttgaaaatgatgatgccaaccgtgcccttatg
ggttcgaacatgcagcgtcaggcagtaccattacttcaaaccgatgcgccgattattgga
acaggtatggagttcgtagccgctaaggattccggaaccgtaattttagcaaaaaatgca
ggaattattgaacgggtatcggctgatgaaattattgtaaaaagagatgacggtcagggt
cgtgacaaatataaactgctgaagtttaagcgttccaatcaaggaacctgtattaaccaa
aggccgattgtatcaaaaggcgagcatgtagaaaaaggagagacgattgccgatgggcct
tctacggacaagggagaaattgcattaggaagaaatcttctaatcggtttcatgacttgg
gaaggctataactatgaggatgcgatcttattaaatgagagattggttatggaagatgcc
cttacctctattcatattgaggaatacgaagcagaagccagagatacaaagctaggacca
gaggaaattaccagagatattccgaacgtaggagaagaagctcttcgagatttagacgaa
cgagggattattcgaattggtgcagaagttaattctggagatattctggtggggaaggtt
acgccaaaaggggaaaccgagcttactgcagaagagcgactactccgtgcaattttcggg
gaaaaggcaagagaagttagggatacttctttaagagtgcctcacggagaatcgggaatt
attgtagatgtaaaagtgttcacccgggagaatggagatgaacttcctcctggtgtaaat
atacttgtaagatgttatattgcgaagaaaagaaaaatcaatgtaggagataagatggca
gggcggcatgggaacaaaggggttatttcaagagtgctgccggaagaggatatgcctttc
cttgcagatggaacaccgctgcaggtagtattgaacccacttggggtaccatcacgtatg
aatatcggtcaggtgctggaaatccatttaggtttagctgcaaaaaagaaaggctggtta
gtagctacctctgtatttgatggtgctgatgaacaggatatccgcgaagtgctgaaagaa
tgtggttatccagaagatgggaaattggtgctttatgatggtagaaccggtatgcctttt
gataaccgtgtaaccgtaggctatatgtacatgctaaagcttcatcatctggtagatgat
aagattcatgccagaagtacaggaccttattctttggtaacgcaacaaccccttggagga
aaagcccagttcggtggacagcgttttggagaaatggaggtttgggcactggaagcttat
ggtgctgcccatacattgcaagaaatcttaacggtaaaatctgacgatgtggttggacgt
gtaaagacgtacgagtctattgtgaaaggcgaaaatattcctgaaccaggcgttcctgag
tcctttaaagtattgattaaagaacttcagagtttggcattagatgttaaggttctaaca
gaagaagatgcagaaatcgaaatccgcgaatcggtggaggatgatatcagtgacctgaat
gtaatcctagacggagaagagtacagtgtctacgaagaggacgatgcagttgaagaaaaa
gaggatgcagatgttcttgatgattttgacacagaggatctagtacaggatgaagattac
gcaagtcatgaggaatacagcgactacgacgagtatgaggatgacgatttttaa
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integrated database retrieval system
