Geospiza fortis (medium ground-finch): 102034123
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Entry
102034123 CDS
T03755
Symbol
SMG8
Name
(RefSeq) SMG8, nonsense mediated mRNA decay factor
KO
K18734
protein SMG8
Organism
gfr
Geospiza fortis (medium ground-finch)
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gfr03019
]
102034123 (SMG8)
Messenger RNA biogenesis [BR:
gfr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
102034123 (SMG8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg8_Smg9
Motif
Other DBs
NCBI-GeneID:
102034123
NCBI-ProteinID:
XP_014163854
UniProt:
A0A6I9Z6V1
LinkDB
All DBs
Position
Un
AA seq
890 aa
AA seq
DB search
MGTDGARRAVTPGRAKPTLGSDEDPRCSLWRHSRHGARRAVTPGAPRLLRAGGDLAAAEN
REAGPGHPSGGPAPLPHAEAHEFWKQQEKLHCLSLLYLFSVCHILLLVHPTCSFDITYDR
VFRALDGLRQKVLPSLKAAIKDCPVGKEWKLNCRPCPPRLLFLFQLNGALKVDPLPSRGQ
DPCGHLEKPPPKKHSPKRRLQHALEDQIYRIFRKSRVLTNQSINCLFTVPANQAFVYIVA
GGPQDGDDPVAMLLDQLRSNCTMRETDSLLAPPLSGPRRYQMMRHGRQQLSFHAESSSSS
SSGQLVDCTLKEFLWQHVELVLSKKGFEDSVGRNPQPSHFELPTYQKWVAAALKLYEVTI
EGKDDDPTCGELSSKIMSSIKVLEGYLDIDTKFSENRCQKALPMAHSAYQSNLPHNYTMT
VHKNQLAQALRVYSQHARGPAFHKYAMQLNEDCYKFWSNGHQLCEERSLTDQHCVHKFHL
LPKAGEKPEADRNPPILYHNSRARSTGACNCGRKQAPREDPFDIKAANYDFYQLLEEKCC
GKLEHINFPIFQPSTPDPAPARDEASPAPPEGEIEKLKEKEPQTQGESTGLSLALSLGQS
TGSLGTYPPDAQGAGDNAESHGQSGDSKGEKRPSLVDRQASTVEYLPGMLHSNCPKGLLP
KFSSWSLVKLGPAKAYNFHTGLDQQGFIPGTNYLMPWDIVIRTRTEDEGDLDTNSWPAPN
KAVPGKRSAVVMGRGRRRDDIARAFVGFEYEDARGRRFMCSGPDKVMKVMGGGPKESALK
ALNSDMPLYILSSTQGRGLKPHYAQFMRLFVVVPDAPLQITLTPQVQPGPPPCPIFYPEK
QEITLPSDGLWVLRFPYAYVTERGPCFPPKESQQLMSYKVLRGILKAITE
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atggggaccgacggtgctcgccgtgctgtcactcccggccgtgcgaagcccaccctcggg
agcgatgaggacccgcggtgctcgctgtggcgtcactcccggcacggtgctcgccgcgct
gtcactccgggcgcgccgcggctgctgcgcgccggcggggacctggcggcggccgagaac
agagaggccgggcccggccacccctccggaggcccggccccgctgccccacgccgaggcg
cacgagttctggaagcagcaggagaagctgcactgcctgagcctcctctacctcttctcc
gtgtgccacatcctgctgctggtgcatcccacctgctccttcgacatcacctacgaccgc
gtgttcagggcgctggacgggctgcggcagaaggtgctgccctccctgaaggctgccatc
aaggactgtccagtcggcaaggagtggaagctcaactgcaggccatgccctccacgcctt
ctcttcctcttccagctcaacggggctctgaaggtggatccgctgccaagcaggggtcag
gacccctgtggtcacctggaaaagccaccccccaagaagcattcccccaagaggaggctg
cagcacgctctggaggatcagatctaccgcatcttccgcaagagccgggtgctgaccaac
cagagcatcaactgcttgttcaccgtgcccgccaaccaggcttttgtgtacatcgtggct
ggtgggccccaggacggagatgatcccgtggccatgcttctcgaccagctcaggagcaac
tgcaccatgagagagacggactcgctgctggctccccccctgtcgggacccaggaggtat
cagatgatgaggcacggccggcagcagctctccttccacgcagagagtagcagctccagc
tcctctgggcagctcgtggactgcaccctcaaggagttcttgtggcagcacgtggagctg
gtgctcagcaagaagggctttgaagacagcgtggggaggaaccctcagccctctcatttt
gagctcccaacctaccagaagtgggtggcagctgctctaaaactctatgaagtgaccatc
gaaggcaaagacgatgacccaacctgtggcgagctgagctcaaaaatcatgagcagcatc
aaagttttggagggctacttagacatagacaccaagttctccgaaaaccgttgccagaag
gctctgcccatggcccacagcgcctaccagtccaacctgccccacaattacaccatgaca
gtgcacaagaaccagctggcccaggccctgcgtgtgtacagccagcacgcccggggccca
gccttccacaaatacgccatgcagctcaacgaggactgctacaagttctggagcaacggg
caccagctctgcgaggagcggagcttgacggaccagcactgcgtgcacaagttccatctg
ctccccaaagcaggggaaaagccagaagcagacagaaatcctccaattctgtaccacaac
agccgggctcgttccactggtgcctgtaactgtggaaggaaacaagctcctcgggaggac
ccctttgatatcaaagcagccaattatgacttttaccagctgctggaagagaagtgctgt
ggcaaactggagcacatcaacttccccatatttcagccaagcacacctgacccagcacct
gctcgggacgaggcatcgcccgcccctccggaaggcgagatcgagaaactcaaagagaaa
gagcctcagactcagggagagagcacaggcctgagcttagccctgagcctgggccagtcc
acgggcagcctgggcacctacccacctgatgcccagggtgcaggggacaatgcagagagc
cacgggcagagcggggactccaagggcgagaagaggccgagcctggtggatcgccaggcg
tccactgtcgagtacctccccgggatgctccattccaactgccccaaaggccttctgccc
aaattctccagctggtcactggtcaagctggggcctgctaaggcttacaacttccacaca
ggcttagatcaacagggttttatcccgggaacaaactatttaatgccttgggacattgtc
atcaggacgagaactgaagatgaaggagatttagacaccaattcctggcctgctcccaac
aaggctgttcctgggaaaaggagcgccgtggtgatgggaagaggccgccgcagggacgac
atcgctcgggctttcgtgggctttgagtatgaagacgcgcgtgggaggaggttcatgtgc
tcggggcctgacaaggtgatgaaggtgatgggaggggggccgaaggagtccgccctgaaa
gccctcaactccgacatgcccctgtacatcctgtcctcgacgcagggacgggggctcaag
ccccactacgcccagttcatgaggctcttcgtggtggttcctgatgctcctctgcagatc
accctgacgcctcaggttcaaccaggaccaccaccctgccctatattttaccccgagaag
caggaaatcacccttccctctgatggactctgggtgctgaggtttccctacgcctacgtg
acagaacgggggccctgcttccctcccaaagagagccaacagttaatgagctacaaagtt
ctccgaggaatactgaaagcaatcacagaatga
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