Geospiza fortis (medium ground-finch): 102035484 Help Entry 102035484         CDS       T03755                                  Symbol DCHS1 Name (RefSeq) dachsous cadherin-related 1   KO K16507   protocadherin-16/23 Organism gfr  Geospiza fortis (medium ground-finch) Brite KEGG Orthology (KO) [BR:gfr00001]  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04515 Cell adhesion molecules [BR:gfr04515]     102035484 (DCHS1) Cell adhesion molecules [BR:gfr04515]  Cadherins   Cadherin related    102035484 (DCHS1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Cadherin Cadherin_3 RET_CLD1 Cadherin_4 PepSY Calx-beta Motif Other DBs NCBI-GeneID:  102035484 NCBI-ProteinID:  XP_005431013 LinkDB All DBs Position Un AA seq 2942 aa AA seqDB search MEQMKRSTMLLLELLILGSLRAVMGSAVLGTLDLQIDEEQPAGTIIGDISAGLPPETSAY MYFISAQEGSGVSTDLGIDENTGIIKTARVLDRETRDRYSFIAVTPEGITVEVNIQVNDI NDHAPAFPKQHSTFQIPEHTPIGSRFPLDPAFDADSGLLNTQGYTIKGGNVGQAFRLETR RGPNGVLYLDLVVSNVLDRENRSSYSLLLEAYDGGSPPRSTQMTLDVSIQDINDNAPSFN QSRYHTLISENLKPGSSILQVFASDADEGDNGDVIYEINRRQSDPDQYFTIDARTGVIKL NKGLDYEVRKVHELVVQARDKAVHPEVTTAFVTIHVRDYNDNQPTMTIIFLSEDGSPQIS EGAQPGQYVARISVSDPDYGEYSNVNVTLEGGDGKFALTTKDNIIYLICVDQLLDREERD SYDLRVTATDSGTPPLRAESAFVLQVMDVNDNPPLFDQQEYKQSIPEVVYPGSFVLQVTA RDKDQGPNGEVRYSILHGHDTHSSWFTIDPATGIITTAAPLDYEKDPQPQLTVLATDRGT PALSSSAVVHVALQDVNDNEPVFRSNFYNVSLKENTPVGTCFLQVTATDADSGAFGSLSY SIGSGIGSIIPTQFSIDKHSGQLCTVQPLDRDEGTAAYDFTITAVDGGGLNSMVYVKVFL EDTNDNRPVFYPLEYAASISTQSMPGTAVLRVTAHDKDEGLNGRVTYRIVRGNSPPLFSL NKDTGVISLSWSLSGKANTLVQLVISAQDGGGLQAQPNARVNISIVEGTVSPPVFEQAQY FFSVPEDVPQGATVGAVQAQNPPGHADDIFYSISSGDPHGYFSIDSASGQLRTSLPLDHE SQAVLVLDVQARSGSPPAYSNTRVKISVSDVNDNAPAFPAPSDSILLPEATETGTTVYTL QAEDRDSGANGQVAFELLSGGEGTFVVERASGAVRLLGALQYEAISAYSLAIVARDSGVP QLSSTFTLLVHVQAEDDNGPIFDTLTYRVEVQEGVPVSTRFLQVRALAHDVEPTALTYHL RADGDAASFGIVPESGWLYVKSALDRETRDLYVLTVLASVGGTGAAADARKTGTSTVRVS VTDENDNSPRLSEERYFFTVSENQAPGSAVGRVMASDRDAGQNSRLTYRLLQHDPNFLIH TQTGEVSTKHSLDREQQSNFQLLVIVQDGGAPPRSATGTIYITVLDENDNAPAFLHVGSG QELTVQVLEEKPSGLLVASLQAKDPDEGENGTIIYSLIGTSCRAANPRCLPSSSKPVLPC PXXRAERAEYLFTVTASDRGTAPRSTSAIVRVQVLPSSRVLPRPDATVLTLHPLEGVKPG SVIGSVAPLDAPARGQLTYTVVGGGGDGTFVVDSVTGEIYAARELDYEAGARHVLQVSAE DTQHGYPSSRLVLVHIHVQDCNDQAPTFPEDPITIVVPENAQAGSSIFTFQALDGDGVGP NSQVRYALLHLEPPGAPFQLDGRSGQLTLRQGLDREAAASFLLVVEATDQARNISQRRSA AVTARVFVTDENDNAPVFLSPASVSVMEDQPTGFVALHVVAQDSDLGENGRVSYSLRAGN ADGRFHLNPSTGALSIVRALNREEVAQHNLTVVATDHGFPRLSATQLLSVLVLDINDEAP VFEKPEYQAHIMENLPAGSPVLQVLATDRDLGANGQVSYGGLSGGPFSIHPQTGLIVTTR PLDREEQEQHVLTVYARDAGLPPSLTKATVWVTVGDENDHAPLLERESCSVEVPENQSRV ALYTLRATDPDGGENGRLEYRVAGGDPGQDFSLDPISGVLSTARALDREQIASYSLTVVV QDHGSPPRSATMSVTVQVLDLNDNAPSFAQASYTVEVPEDLPVGALVLQLVAEDPDEGTN GQVSYYLGNESLGMFQVEPQSGRLRSAQALDRERQPSYSFLARAVDSAPWEPRSTAVRVT VVVRDVNDHVPAFLHSPLTVNLSRHTPLKQVVATMRAEDRDAGANASILYRFSTPNPAFA INSYTLFVLAMDLGQPALSSTGVVVIHVQEEPYRGLRFPRSTRDVALAENAAPGTEVASV QAVHTGGSSGHITYSIISGNERNTFLIQPSSGAISVQDSSSLDFEASPRLRLVIQAETAA SFGFMAINLNLQDVNDNLPRFQLQNYVAFIWESQGYDSPVIQVLADDLDQGVNGQVTYAI NQSLPMPGLYHIDPQTGTITTAAILDREIWSQTRLVVTAMDRGTPPLMGSATLTVVVMDI NDNSPTIPVPWEIRVPENTLLGTQIAQLTGNDVDSGPALSYTLLLEGDVADTFGVLRYGG HVSLTGPLDHEQRSRYTLTLRASDTRHETEANLTILVEDVNDNVPTFTQVFYQVLLPEHT PAGSVILTVSATDPDSGSNGDITFHLAVPSPDVAIDPSNGTLFTTRQVEFNASQPTLDLV VEARDHGSPSLSSWATVQLQVLDVNDHSPRFQEPCYNASVPEDLRPGTTVLMLEAGDADL SRENAGFDYTIVSGNGGNAFQVESRVARAGGQLRTQGALVLVEPLDFEAIPVYNLTVAAS DRGVPQRSATVPVLITVQDVNDNAPVFMVVRATDTPGGHFALVPVAIEVKDINDNKPYFP VEVLSASIRENLPPGTLVTTLRAVDADSGAFGELRYVVLEQALGDPSTGDGRDAFAVNGS SGELRSRLTFDYERAKAFQLLVRATDTGNASATVTVRVLVTGEDEYDPIFLSPSFNFEVP EGARKGQSIGRVLATDEDEGVDGVVLYTLAKPSPYFAINQTTGSIYLRVDSQPQAGAGRA KREPREMSLEVQARSPLPASRVASAQVTIDVTHTSFGLAPDLNLLLVAVAASLGGVFTEI ARLKDESSLRKPFPAKPKAEPKPRIDPPPLITSVAHPGAKSVPPKPPPGRTFPHPSSLRR SPISHEGSISSSAMSPSFSPSLSPLAARSPVVSPFGISQGPSTSTISAEHSLEPPEEAEL RI NT seq 8829 nt NT seq  +upstreamnt  +downstreamnt atggagcaaatgaagaggtcaacaatgcttctgctggagctgcttattcttgggagcctg agagcagtgatgggctctgctgtcctgggcaccctggatctacaaatagatgaggagcag ccggctggcaccatcattggggacatcagtgctggcctaccccctgaaactagtgcctac atgtatttcatctcagcacaggagggcagtggggtctccactgacttggggatagatgag aatacagggatcatcaaaacagctcgtgtcctggaccgggagactcgggaccgctacagc ttcattgctgtcaccccagagggcatcacggtagaggtgaacatccaagtgaatgacatc aatgaccatgccccagcgtttcccaagcagcacagcacctttcagatcccagagcacacc cccattggcagcaggtttcccttggacccggcctttgatgccgacagtggcctcctgaac acacaaggctacacgattaagggagggaatgtggggcaggccttccgcctggaaacgcgc cgaggacccaatggggtcctgtatttggacctggtggtcagcaacgttctggatcgggag aaccgttcctcatactccctgctgctggaagcctacgatgggggctctccgccccggagc acccagatgacactggacgtgtccattcaggacatcaacgacaacgcccccagcttcaac cagagccgctatcacacgctcatttcagagaatctgaaacctggcagcagcatcctgcag gtctttgcctctgatgcagatgaaggtgacaatggggatgtgatttacgagatcaaccga cggcagagcgatcctgaccagtacttcaccatcgatgcccggactggagtcatcaagctc aacaagggtctggactatgaagtgaggaaggtgcatgagctggtggtgcaggcaagggat aaggctgtccatcctgaggtcaccacagcctttgtcactatccatgtgcgtgactacaat gacaaccagcccaccatgactatcatctttctgagtgaggatggctccccacagatctct gagggagcccagcccggacagtatgtggcacgcatttctgtttccgatcccgactatgga gagtattccaatgtcaatgtcacactggagggaggagatggcaagtttgccctcactacc aaggacaacataatctatctgatctgtgtggaccaacttctggatcgggaggaaagagac tcctatgatctgcgggtgacagctactgactcaggaacgcccccactccgggcagaatca gcctttgtgctgcaggtgatggatgttaatgacaatcccccactctttgaccagcaggag tacaagcagagcatccctgaggtggtgtacccaggcagctttgtcctgcaggtgacagct cgtgacaaggaccagggtcccaatggggaggtgcggtacagcattctgcatggccatgac acccactccagctggtttaccattgaccccgccactggcatcatcaccactgctgcccca ctggattatgaaaaggatcctcagcctcagctcactgtgctggccacagaccggggaacc cctgccctctcttcctcagctgtggtgcacgtggccttgcaggatgtcaatgacaatgag ccagtgttcaggagtaacttctacaacgtgtctctgaaggagaacacccctgttgggacc tgcttcttgcaggtgacagccacagacgcagacagcggtgcgtttggctccctttcctac tccatcggctctggcatcggcagcatcatccccacgcagttcagcattgacaagcactcg gggcagctgtgcacggtgcagcccctggaccgtgatgagggcacagctgcctacgacttc accatcactgcagtggacgggggcggcctgaactccatggtgtacgtgaaggtgttcctg gaggacacgaacgacaaccggccggtgttctacccgctggagtacgctgccagcatcagc acgcagagcatgccgggcacggccgtgctgcgcgtcactgcccacgacaaggacgagggc ctcaatggcagggtgacataccgcatcgtccggggaaactcgcccccgctcttctccctc aacaaggacacaggtgtcatttctctgtcatggtctctgagtggcaaagccaacaccctg gtgcagctggtgatctctgctcaggatggggggggcctgcaggcacagccgaatgctcgg gtaaacatcagcatcgtggagggcacagtctcaccccctgtctttgagcaagctcagtac ttcttcagcgtgcccgaggacgtgccacagggtgccactgtgggggctgtccaggcccag aacccaccaggtcatgctgatgacatcttctattccatctcctcgggggaccctcatggc tatttctccatcgactcggcctcggggcagctgcgcaccagcctgcctctggatcacgag tcccaggcagttctcgtcctggatgtccaggcccggagcggttccccccctgcctacagc aacacgcgggtgaagatctccgtgtcagatgtgaacgacaacgcgccggcattcccagct ccctctgactccatcctgctgccagaggccacagagaccggcactacagtctacaccctg caggctgaggaccgtgacagcggcgccaatggccaggtggcctttgagctgctctcaggg ggtgagggcacctttgtcgtggagcgtgcctcgggggccgtgcggctcctcggggccctg cagtacgaggccatctcagcctacagcctggccatcgtggcccgggacagcggcgttccc cagctcagctccaccttcacgctgctggtgcacgtgcaggccgaggatgacaacgggccc atctttgacactctcacctaccgcgtggaggtgcaggagggcgttcccgtctccacccgt ttcctgcaggtgagggccctggcacatgatgtggagcccacggccctcacctaccacctg cgtgcggatggggacgctgccagcttcggcatcgtgcccgagagcggctggctgtacgtc aagagcgccctggaccgggagacgcgggacctgtacgtgctgacggtgctggcctcggtg ggaggcaccggggccgcggcggatgcgcggaaaaccggcaccagcaccgtgcgtgtcagt gtcaccgacgagaacgacaacagcccacggctgagcgaggagcggtacttcttcaccgtg tctgagaaccaggctcctggcagtgccgtgggaagggtgatggcgagcgaccgcgacgcc gggcagaacagccggctcacctaccgcctgctccagcacgaccccaactttctgatccac acacagacaggagaggtcagcaccaagcacagcttggatcgggagcagcagtccaacttc cagctcctggtgattgtgcaggatgggggagcaccgcctcgcagtgccaccggaaccatc tacatcactgtgctggatgagaatgacaacgctcctgctttcctccatgtgggcagcggt caggagctaactgtgcaggtgctggaagagaagccatcgggactcctggtcgcctccctg caggccaaggaccctgacgagggggagaatgggaccatcatctactccttgataggtacg agctgcagagcagcaaacccgcgctgcctccccagcagcagcaaacctgtgctgccctgc ccnnnnnggcgggcggaacgggccgagtacctcttcacggtgacagccagcgaccgtggc acggcacctcgcagcacatcagccatcgtccgtgtgcaggtgttgccatcctcccgtgtg ctgccacggcctgatgccaccgtgttgaccctgcatcccctcgagggggtcaagccgggg tctgtgattggttcagtggcccccctggacgcccctgcccgaggacagctgacctacacg gtggtaggaggtggtggggatggcacctttgtggttgacagtgtgacaggggagatttac gctgcccgtgagctggactatgaggctggggcacggcacgtgctccaggtgagtgcagag gacacgcagcacggctatccctccagcaggttggtgctggtccacatccacgtgcaggac tgcaatgaccaggcccccaccttccccgaagaccccattaccattgtggtgcctgagaat gcccaggctggctcctccatcttcaccttccaggcgctggacggggatggggtgggcccc aacagccaggtgcgctatgctctgctgcacctggagccccccggagcccccttccagctc gacggccgctcggggcagctcaccctgcgccagggcctcgaccgcgaggccgccgcctcc ttcctgctggtggtggaggccacagaccaggcgcgcaacattagccagcgccgctcggct gccgtcaccgcccgtgtgttcgtcaccgacgagaacgacaacgcgcccgtcttcctctcg ccggccagcgtcagcgtcatggaggaccagcccacgggctttgtggcgctgcacgtggtg gcccaggacagcgacctgggagagaacgggcgcgtgagctactccctgcgagcaggcaac gctgatggccgcttccacctgaaccccagcactggtgccctctccatcgtgcgggccctg aaccgggaggaggtggcgcagcacaacctgacggtggtggccacggaccacggcttccca cgcctctcggccacacagctgctgtccgtgctggtgctggacatcaatgacgaggctcct gtctttgagaaacccgagtaccaggcccacatcatggagaacctgccagccggcagcccg gtgctgcaggtgctggccacggaccgcgatctgggtgccaatgggcaggtatcctatggg ggtctctctggggggccgttctccatccacccacagactgggctcattgtcaccacgcgt cccctggaccgggaggagcaggagcagcacgtgctgacagtctatgcgcgggacgccggc ctgccacccagcctcaccaaggccacggtgtgggtcaccgtgggggatgagaatgaccat gcacccctcctggagagggagtcttgctccgtggaggttcctgagaaccagagtcgtgtg gcactctacaccctgcgggccactgatcccgatggtggggagaacggacgcctggaatac cgggtggcaggtggagaccctgggcaggatttcagcctagaccccatctctggtgtcctc tccactgcacgtgccctcgaccgagagcaaattgcttcctacagcctcactgtagtggtg caggaccacggctccccgccacgcagtgccaccatgtcggtgactgtgcaggtgttggac ctcaatgacaatgcccccagttttgctcaggccagctacacggtggaggtgccagaggac ttgccagtcggtgccctggtgctgcagctggtggctgaagacccagatgagggcaccaat gggcaggtctcctactacctgggcaacgagtcgctgggcatgttccaggtggagccgcag agcgggcggctccgcagtgcgcaggccctggaccgggagcgccagcccagctacagcttc ctggccagggcggtggactcggcgccgtgggagccccgcagcacggccgtgcgcgtcacc gtcgtggtgcgggatgtcaacgaccacgtgccggccttcctgcacagcccgctcaccgtc aacctgtcccgccacacgcccctcaagcaggtggtggccaccatgagggccgaggacagg gacgcgggtgccaacgcctccatcctgtaccgcttttccacccccaaccccgccttcgcc atcaactcctacacactcttcgtgctggccatggacctggggcagccagcgctctcctcc acgggggtggtggtgatccacgtgcaggaggagccctaccgcgggctgcgcttccctcgc agcaccagagatgtggccctggctgaaaatgccgccccaggcactgaggtggcgagtgtc caggccgtgcacacggggggctcctcagggcacatcacctacagcatcatcagtggcaac gagaggaacaccttcctgatccagcccagctcaggtgccatctcagtgcaggactccagt agcctggacttcgaggccagcccccgactgcgcctggtgatccaggcagagactgcagct tcctttggctttatggccatcaacctcaacctccaggatgtgaacgacaacctgccccgc ttccagctgcagaactatgtggcattcatctgggagtcacagggctatgactcacctgtc atccaggtgctggcagatgacctggaccagggagtgaatgggcaggtgacttatgccatc aaccagtccctgccaatgccgggcttgtaccacattgaccctcagactggcaccattacc actgctgccatcctggacagggagatctggtcccagacccgcctggtggtgacagcgatg gaccgaggaacacccccgctgatgggctcagccacgctgaccgtggtggtgatggacatc aatgacaatagccccaccatcccggtgccctgggagatccgtgtccctgagaacacactg ctgggcacccagatagcccagctgactgggaacgacgtggactcgggcccggcactgtcc tacacgctgctgctggagggggacgtggcagacaccttcggggtgctgcgctacgggggc cacgtgtccctgacggggccgctggaccacgagcagcgcagccgctacaccctgaccctg cgcgcctccgacacgcgccacgagaccgaggccaacctcaccatcctcgtggaggatgtg aacgacaatgtgcccaccttcacccaggttttctatcaggtgctgctgccagagcacaca cctgctggcagtgtcatcctcactgtgagtgcaacagaccccgactcagggagcaacggg gacatcaccttccatctggctgtgcccagccctgatgttgccatcgaccccagcaatggg accctcttcaccacccggcaggtggagttcaacgccagccagcccaccctggacctggtg gtggaggcccgcgaccacggctctcccagcctctcatcctgggccacagtgcagctccag gttttggatgtgaacgaccacagcccccgcttccaggagccgtgctacaacgccagcgtt cctgaggacctgcgcccaggcaccaccgtgctgatgctggaggcgggcgacgccgacctc tcccgggagaacgccggctttgattacaccatcgtcagcggcaacggtggcaacgccttc caggtggagagccgggtggcgcgggccgggggacagctccgcacgcagggagccctggtg ctggtggagcccctggacttcgaggccatcccggtgtacaacttgacggtggctgcctcg gaccggggcgtgccacagcgcagcgccaccgtgcccgtgctgatcacggtgcaggacgtc aatgacaacgcgcccgtgttcatggtggtgcgggccacagacacgccgggcgggcacttt gcgctggtccccgtggccattgaggtgaaggacatcaacgacaataagccgtacttccca gtggaggtgctgagcgccagcatccgggagaacttgccccctggcacactggtgaccacg ctgcgcgccgtggatgccgacagcggcgcctttggggagctgcggtacgtggtgctggag caggcgctgggggaccccagcacgggggacggccgggacgcctttgctgtcaatgggagc tctggggagctgcgctcccgcctcacctttgactacgagcgagccaaagccttccagctc ctggttcgggccaccgacactggcaatgcctcggccactgtgaccgtgcgggtgctggtg acgggggaagacgagtatgatcccatcttcctgagcccctccttcaactttgaggtgcct gagggcgcgcgcaaagggcaaagcatcgggcgggtgctggccacggatgaggatgagggg gttgacggtgttgtgctgtacaccctggcaaagccctcaccatactttgccatcaaccag accacgggctccatctacctgcgtgtggacagccagccccaagccggggctgggcgtgcc aagagggagccacgggagatgagcctggaggtgcaggcacgcagcccactgcctgcttcc cgtgtggcctctgcgcaggtcaccatcgacgtcacacacacctcctttggcctggcacct gacctcaacctcctgctggtggccgtggccgcctcgctgggcggtgtgttcacggagatt gcccgcctcaaggatgagagctccctgcgcaagcccttcccagccaagcccaaggcagag cccaagccccgcatcgaccccccgcccctcatcacctcagtggcccatccgggtgccaag tctgtgccccccaagccaccgccaggcaggaccttcccgcacccgtcctccctgcgccgc tcgcccattagccacgagggctccatctcgtcctccgccatgtcgcccagcttctccccg tcgctgtccccgctggccgcccgctccccggtggtctcgcccttcggcatctcacagggg ccgtccacctccaccatcagtgctgagcactcactggagccccctgaggaggccgagctc aggatttag

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