Geospiza fortis (medium ground-finch): 102040201
Help
Entry
102040201 CDS
T03755
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102040201 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gfr03019
]
102040201 (PARN)
Enzymes [BR:
gfr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
102040201 (PARN)
Messenger RNA biogenesis [BR:
gfr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
102040201 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
RRM_1
Motif
Other DBs
NCBI-GeneID:
102040201
NCBI-ProteinID:
XP_005420477
UniProt:
A0A6I9HHL2
LinkDB
All DBs
Position
Un
AA seq
638 aa
AA seq
DB search
MEVIRSNFKDNLNKVYEAIEESDFLAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDDTEEKYIMKSFNFYIFPKPFNRNSPDVKFVCQSSSIDFLANQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGSLSYISPNSTKCPVTIPEDQKKF
VEKVVEQIEDLLKNEGSESLELEPCTGFQRKLIYQTLSWKYPKGIHVETLESDKKERYIV
ITKVDEEERKRREQQKQAKEQEELNDAVGFSRVVHAIANSDKLVIGHNMLLDVMHTIHQF
YCPLPDDLSEFKEVTSCVFPRLLDTKLMASTQPFKELINNTSLAELEKRLKEVPFSPPKV
ESAEGFPSYNTASEQLHEAGYDAYITGLCFISMANFLGSFLSPPKNHVSARSKLIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTS
AFVSLSQPEQVQIAVNTSRYAESYRIQTYAEYVEKKHEEKQAKRKCTEDSWKEMERKRLK
TQCTPYVSQSRYCCVNSFTGTSTVGKRSMSPIEEETVSDDMEEGEGQDPENDQTDSCAES
LPDGKKRAKKLKKIKTEQVPAGSLTTSSTGIFEVPETW
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgatcaggagcaattttaaggataatctaaacaaagtgtatgaagccattgaa
gagtcggacttcctggccatcgatggagagttttcagggatcagtgatgggccttcagtt
agtgcgttaacaaatggctttgacactccagaagaaaggtatcagaaacttaaaaagcat
tccatggattttttgctctttcagtttggcctttgcacttttaaatatgatgacacagaa
gaaaagtatataatgaagtcatttaatttctatatttttccaaaaccctttaacagaaat
tcaccagatgtcaagtttgtctgtcagagttcaagtatagattttttagcaaaccaagga
tttgattttaataaagtttttcgcaacggaattccgtatttaaatcaggaagaagagaga
cagctaagggaacagtatgatgaaaaacgttctcaagccaatggtgcaggatctctgtca
tacatttctcctaattccacaaagtgccctgtaacaattcctgaagatcagaaaaaattt
gtagagaaagtagtggaacagatagaagacttattaaagaatgaaggaagtgaaagtttg
gagctggagccatgtacaggatttcaaaggaaattaatttatcagaccttgagctggaag
tatccaaaaggtatccacgtggaaactctggagtcagataagaaggagagatatattgtt
attactaaggtagatgaagaggaacgaaaaagaagagagcagcagaaacaagcaaaagag
caggaagaattgaatgatgctgtaggattttccagagttgttcatgccattgctaattct
gacaagcttgttattgggcacaacatgctgctggatgttatgcacaccatacatcagttc
tattgccccctacctgatgacctaagtgagttcaaggaagtaacatcatgtgtctttccc
cggctactggatactaaactgatggcaagtacgcaaccttttaaggagctcattaataat
acatcacttgcagaactggaaaaacgtttaaaagaggttccattcagccctcctaaagtt
gaaagtgcagaaggatttccaagttacaatacagcatctgaacaactccatgaagcagga
tatgatgcttatattactggattgtgcttcatttccatggctaatttcctaggttcattc
ctcagtcctccgaaaaaccatgtgtctgctagatcaaaactcattgaacctttttttaac
aagctatttcttatgagagtaatggacataccatatctcaatttggaaggaccagacttg
cagcctaaacgagatcatgttcttcatgttacttttcccaaagagtggaagactagtgac
ctataccagctttttagtgcctttggtaacattcaggtttcgtggattgacgatacatca
gcatttgtctcactgagccagccagagcaagtacaaatagctgtaaacaccagccggtat
gctgaaagttataggatccagacatatgcagaatatgtggagaaaaaacatgaagaaaaa
caggccaagagaaaatgtacagaagatagttggaaggagatggagaggaagaggttaaaa
acccagtgcacaccttacgtttcccagagtcggtactgctgtgttaacagttttacaggt
accagtacagtgggaaagagaagcatgagtcctattgaggaagaaactgtttctgatgat
atggaagagggagaaggccaagatccagaaaatgatcagacagactcctgtgcagagtcc
cttccagatggcaagaagagagccaaaaagttgaaaaagatcaagacagagcaagttcca
gcaggaagcctcacaactagttccactggaatttttgaggtccctgaaacatggtag
DBGET
integrated database retrieval system
