Gavialis gangeticus (Gharial): 109289683
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Entry
109289683 CDS
T07453
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ggn
Gavialis gangeticus (Gharial)
Pathway
ggn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109289683 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ggn03019
]
109289683 (CNOT1)
Messenger RNA biogenesis [BR:
ggn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109289683 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109289683 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
109289683
NCBI-ProteinID:
XP_019361384
LinkDB
All DBs
Position
Unknown
AA seq
2383 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVIK
LSKVQEVIFGLALLNSFSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCTSVEECRNIIMQFGVREVTASQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGTQAHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQIRDSKGLQIVVFGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLINPEIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFITACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMASL
SLGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTTGFSGIGGLSSQLPVGG
LTTGSLTGIGTGALGLPAVNNDPFVQRKLSTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFATKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTASTTPATSTTCTATVPPQPQYSYHDINVYSLGGLAPHITLNPAI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVA
AHHMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQREMMEQAAAQLAQENC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQAWATDDVAQIYDKCMTELE
QHLQSIPHTLTMNPQTQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLITRFFRLCTEMCVEISYRA
QAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGV
LLQDHEVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPG
FVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYK
GTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVD
MLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNIQ
LINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQ
LRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNP
AFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7152 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctttcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactacagagccagccagcaggaaatacaacatattgtgaatcgacacggt
cccgaggcagacaggcatttacttcgctgtctattctcacatgtggatttcagtggcgat
ggtaaaagcagtggtaaagatttccatcagactcagtttctgatccaagagtgtgcatcc
ctgattacaaagccaaactttatctcgacgctgtcctacgccattgacaatccattgcac
tatcaaaagagtctaaagccttcaccccatctatttgcccaactgagtaaagttatcaaa
ttaagtaaagttcaagaggtgatttttggtcttgctttactgaactctttcagctcagat
ctcagaggttttgcggctcagtttatcaaacagaaacttccagatcttctgcgctcttac
attgacgcagacgtcagtggaaatcaagaaggtggcttccaagatattgcaatagaagtc
ctgcaccttctcctctcccatctcctttttgggcagaagggagcctttggggttggacag
gaacagattgacgctttccttaaaacattacgtagagattttccccaagagcgctgtcct
gtggtgcttgcaccacttctataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggatagccaaaaccatgatggagagctctttggcagactttatgcaa
gaagtaggctatggcttttgtacaagtgttgaagaatgtcgcaatataatcatgcagttt
ggtgtgcgggaggtcacagcttctcaggttgccagagttttgggaatgatggcccgaact
cattcagggttgacagatggtattccattacaatccatctcagctcctggaagtgggatc
tggagtgatgggaaagacaaaagtgatggaacacaagctcacacctggaatgtggaggtt
ttaatagatgttcttaaagagttgaatcctagtttgaacttcaaggaagtaacctatgaa
ttggaccacccagggtttcaaatccgtgacagcaagggtctgcagattgtggtgttcggc
atccagagagggctaggcatggaagtcttcccagttgatctcatatataggccttggaaa
catgcggagggccagctctccttcattcagcattccctcataaatccagagatcttctgt
tttgctgactacccctgtcatactgttgccacagacatccttaaagcgccaccagaggat
gacaatcgagaaattgccacatggaagagcctggatttgatcgaatccttgctgcgtttg
gcagaggtggggcagtatgagcaggttaagcagctcttcagtttccctatcaagcactgc
ccagacatgttggtattggccttattacagatcaacacttcctggcataccttgcgccat
gagctcatctctacacttatgccaatttttcttggcaatcaccccaactctgccattatt
ttgcactatgcatggcatggacagggtcagtctccttcaattcgccaacttatcatgcat
gcaatggcagagtggtacatgagaggggagcagtatgatcaggcaaaactgtcacgcatt
cttgacgtggcgcaagacttgaaggccttgtcaatgctgctcaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgacgggaatacctcaagcttgacaaatgg
ctcacagataaaattcgggagcatggggagcccttcatcacagcctgtatgactttctta
aagaggcgatgcccatctatcctgggtggccttgccccagaaaaggaccagcccaaaagt
gctcagcttccaccagaaactctagcgactatgttggcttgcttacaagcttgtgccggg
agtgtttctcaggagctatcagagaccatcctcaccatggtagcgaactgcagtaatgtc
atgaacaaagctagacagccaccacctggagtcatgcccaagggacgtccacctagtgct
agcagtttggatgctatttctcctgtacagattgacccgcttgctgggatggcatctctt
agtttaggtggttcagcagctccacatacccagagtatgcaaggcttccctcctaacttg
ggctctgctttcagcacacctcagtcaccagcaaaagcatttcctcccctttccacccaa
aaccagaccacaggttttagtggcattggaggactctcttcacagcttccagtaggtggt
cttactacgggtagcctgactggtataggaactggggcccttggcctccctgcagtgaac
aacgatccattcgtgcaaaggaaactgagcacatctggactgaaccagcctacattccag
cagagtaagatgaaaccttccgatttatctcaggtgtggccagaggcaaatcagcacttt
agcaaagaaatagatgatgaggcaaatagctactttcagcgcatttataaccatccacca
cacccaaccatgtctgtagatgaggtattagaaatgctacagagatttaaagactccaac
attaaacgggaacgagaagtgtttaactgtatgctgaggaacttgtttgaggagtaccga
tttttcccccagtacccagataaagagctgcacataacagcctgcctctttggtgggata
atagagaaaggactggttacttatatggcattgggccttgccctgcgctatgttcttgaa
gccttacgaaagccttttgcaaccaaaatgtactattttggtattgctgcactagataga
tttaaaaatagattgaaggactatccccagtattgtcagcacttggcttctattagtcac
tttatacagttccctcatcacctacaggagtacattgaatatggacagcaatccagagat
cctcctgtgaagatgcagggttcaatcaccacccctggaagtattgcacttgcccaggcc
caagcccaggcccaggttccagcaaaagctcctcttgctggtcaagtcagcactatagta
accacctcaaccaccaccactgttgcaaaaaccattacaatcacccgaccaactggagtc
agcttcaaaaaagatgttccgccttccattaatactaccaatattgataccttgctagtt
gcaacagatcaaacagagagaattgtggaacccccagaaaatgtccaggaaaaaatcgca
ttcatcttcaacaatctctctcaatcaaacatgacacagaaggttgaggagctgaaggaa
actgtgaaagaagagttcatgccttgggtttcacagtaccttgtgatgaaaagagtcagt
atcgagccaaactttcacagcttgtattcaaacttccttgatactcttaagaatccagaa
tttaataagatggttctgaatgaaacctatagaaatatcaaggtgctgctgacatctgat
aaggctgctgccaacttctcagaccgttccctgttaaagaaccttggccactggttggga
atgatcacattggctaaaaataaacccatcttgcacacagatttggatgtgaaatcctta
cttctggaagcctatgtcaagggacagcaggagttgctttatgtagtgccatttgttgcc
aaagtcttagaatccagtgtcaggagtgtggttttcagacctccaaacccttggacgatg
gcaatcatgaatgtattagctgagctacatcaagagcatgacttaaaactgaacctgaag
tttgagattgaggtattgtgcaagaaccttgcattagacatcaatgagctgaaacctgga
aacctcctgaaagataaggatcgattgaaaaatctggatgaacagttgtctgctccaaag
aaagatgtaaagcagccagaggaactaccacctatcacaacaaccactgcttcaacaact
ccagctaccagcaccacttgtacagccactgttcctccacaacctcagtacagctaccat
gatatcaatgtctattcactgggagggctggctccacatattactctaaatccagctatt
ccactgtttcaggctcacccgcagttaaagcagtgtgtgcgtcaggctatagagcgagcc
gtgcaggagcttgtccacccagttgtagatcggtccattaagattgccatgactacttgt
gaacagatagtcaggaaagattttgcactggattcagaagagtcacgcatgcgtgtagca
gcacaccacatgatgcggaacctgactgctggaatggctatgattacctgcagggaacct
ttgctgatgagcatagctaccaacttgaagaacagttttgctactgctctgagggcagca
tccccacagcagagggagatgatggagcaggcagctgcacagttagctcaggagaactgt
gaattagcatgctgcttcattcagaaaacagctgtggaaaaggcaggccctgaaatggac
aagaggctggcaactgaatttgaactcagaaagcatgccagacaagagggtcggcgttac
tgtgatccggttgtgttaacttaccaggctgaacggatgccagaacagatcagactgaag
gttggtggtgtggacccaaaacagctagctgtttatgaagagtttgcccgcaatgtccct
ggcttcttacctaccaatgacttaacccagcccacaggattcttggctcagcctatgaag
caggcctgggctactgatgatgtagcacagatctacgataaatgtatgacagaactggaa
cagcatctacaatccattccacataccctgaccatgaatccacaaactcaagccttacgc
agcctcttggaggctgtagtggtggctcgtaactcccgtgatgctattgctgctcttgga
ctgctacagaaggctgtggagggcttattggatgccaccagtggtgcagatgctgacctc
ctactccgctaccgtgaatgtcatctgcttgtactgaaagctttgcaggatggccgtgcc
tatgggtccccatggtgtaataaacagattaccagatgcctgattgaatgccgggatgag
tataaatacaatgtagaagctgtagagctgctaatccgcaatcaccttgttaacatgcag
cagtatgaccttcatttagcacagtcaatggagaatggcttgaactacatggcagtggca
tttgccatgcaactggtgaagatcctgttggtggatgaaaggagtgtagctcatgtaacg
gaggcagatttgttccacacaattgagacactgatgaggattaatgcacactccagagga
aatgccccagaaggattaccccagttgatggaagtggttcgctctaactatgaagcaatg
attgaccgtgcccatggagggcctaattttatgatgcattctggaatttcccaagcctct
gagtatgatgatccaccaggcctgagggagaaggcagagtatctactgagggaatgggtg
aatctctaccattcagctgcagctggccgtgacagtaccaaagctttctctgcgtttgtt
ggacaggtagagcttttggaaagaaagatgcaccagcaaggaatcctgaaaacagatgac
ctgatcactcgcttctttcgcctttgcactgaaatgtgtgttgaaatcagctaccgtgct
caagctgagcagcagcacaatcctgctgccaaccccaccatgatccgagccaagtgctac
cacaacctggatgcctttgtgcggcttattgcactgctggtgaagcactctggggaggct
accaacacagtcacaaagatcaacctgctgaataaggttcttggtatagtggtgggagtt
ctccttcaggaccatgaagttcgccagagtgagtttcagcagcttccttaccaccgcatt
ttcattatgttgctgttagaattaaatgctcctgagcatgtactggagactatcaacttt
cagaccctcacagctttttgtaacacatttcatatcctgaggcctacaaaagctccaggt
tttgtttatgcctggctggaactgatctctcatcggatatttattgcaagaatgctggca
catacaccacaacagaagggttggcctatgtacgcccagttgttgattgatctcttcaag
tacttggctccttttcttagaaatgtggaactcaccaaacctatgcaaattctctacaag
ggcacactgcgtgtattgctggtcttactgcatgattttccagaattcctttgtgattac
cactatgggttctgtgatgtgatcccacccaactgtatccagctgaggaatctgattttg
agtgccttcccacgtaacatgagacttccagatcctttcactcctaaccttaaggtggac
atgttaagcgagattaatattgccccacgaatactcactaacttcactggagtgatgcca
ccacagttcaaaaaagacttggattcatatctcaaaactcgctctcctgtcactttcctg
tccgatttgcgcagcaacctacaggtatcaaatgaacctggcaatcgctacaacatccag
ctaattaatgcactggtgctctatgtaggtactcaggctattgcacacattcacaacaaa
ggcagcacaccctctatgagcactatcacccattcagcccatatggacatcttccagaat
ctggctgtggaccttgacactgaaggtcggtatcttttcttgaatgcaattgccaatcag
ctgcggtaccccaacagtcacacgcactatttcagttgcaccatgctttacctatttgca
gaggccaacactgaggctatccaggaacagattacgagggttctgttggaacgactgatt
gtaaataggcctcacccatggggtctcctcattaccttcattgagctgataaaaaacccg
gcatttaagttctggaaccatgaatttgtccattgtgctccagaaattgagaagttgttc
cagtcagttgcacagtgctgtatggggcagaagcaggcacagcaagtgatggaagggact
ggtgccagttag
DBGET
integrated database retrieval system
