Gavialis gangeticus (Gharial): 109294996
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Entry
109294996 CDS
T07453
Symbol
LSM4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4 isoform X1
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
ggn
Gavialis gangeticus (Gharial)
Pathway
ggn03018
RNA degradation
ggn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109294996 (LSM4)
09123 Folding, sorting and degradation
03018 RNA degradation
109294996 (LSM4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ggn03019
]
109294996 (LSM4)
03041 Spliceosome [BR:
ggn03041
]
109294996 (LSM4)
Messenger RNA biogenesis [BR:
ggn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109294996 (LSM4)
mRNA degradation factors
5'-3' decay
Lsm complex
109294996 (LSM4)
Spliceosome [BR:
ggn03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
109294996 (LSM4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
109294996
NCBI-ProteinID:
XP_019369183
LinkDB
All DBs
Position
Unknown
AA seq
167 aa
AA seq
DB search
MSTCAVASWELCSSKLPPCRARYKLTKAGRDLFSPPPVTSRASLFWATVQLSHVRDFPCS
HHRAGLGATFQGQRPQEDGDKFWRMPECYIRGSTIKYLRIPDEIIDMVKEEVVSKGRGRG
GLQQQKQQKGRGAGGTGRGVFGGRGRGIPGSGRGQQEKKPGRQSAKQ
NT seq
504 nt
NT seq
+upstream
nt +downstream
nt
atgtccacatgtgctgtggcgtcctgggagttgtgtagcagcaagctccctccatgtcga
gcacggtacaagttaacaaaggcagggcgggatctcttctcccctcctccagtgacatca
cgagccagcctgttctgggcaactgttcagctcagccatgtccgtgacttcccttgttcc
caccaccgggctggtctgggcgccacattccaggggcagcgtcctcaggaggacggggac
aagttctggaggatgccagagtgctacattcgcggcagcaccatcaagtatctgcgcatc
ccggacgagatcatcgacatggtgaaggaggaggtggtgtccaagggcaggggccgcggt
gggttgcagcagcagaagcagcagaagggccgtggagctggaggcacggggcgaggtgtg
ttcggaggccgcggccgagggattccaggcagcggccgagggcagcaggaaaagaagcca
ggcaggcagtctgcaaagcagtga
DBGET
integrated database retrieval system
