Gavialis gangeticus (Gharial): 109295433
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Entry
109295433 CDS
T07453
Symbol
PAN2
Name
(RefSeq) PAB-dependent poly(A)-specific ribonuclease subunit PAN2
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
ggn
Gavialis gangeticus (Gharial)
Pathway
ggn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109295433 (PAN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ggn03019
]
109295433 (PAN2)
Enzymes [BR:
ggn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
109295433 (PAN2)
Messenger RNA biogenesis [BR:
ggn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109295433 (PAN2)
mRNA degradation factors
3'-5' decay
Pan complex
109295433 (PAN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAN2_N
UCH_1
RNase_T
UCH
WD40_CDC20-Fz
Motif
Other DBs
NCBI-GeneID:
109295433
NCBI-ProteinID:
XP_019369836
LinkDB
All DBs
Position
Unknown
AA seq
1134 aa
AA seq
DB search
MNFEGLDPSSLAEYASPLHPALEPVLDPHLPATLLQNVELDPDGVALDGMAVPESVHIME
GVYSELHTAMSEVGVPVSVAHFDLHEEMLWVGNHGGHATSFFGPTLERYSSFQVHGSDDV
RHIQSLENGVLFLTKTNLKYMSRGGLIIFDYLMDESEDMHSLLLTDPSTLLVGGLQNHVI
EIDLNTVQETQKYTVEVPGITIMRQSNRFFFCGHTSGKVSHVDPAFLRFVPTYTSRLAIV
SQTGQGQFCEPTGLANPADIFHVTTVGQLLMTFDVSGTKQALAFGDSEGCVHLWADSPEA
TFNAFSRETDFALPCIVDSLPHLDWGQDLVPLSLIPVPLTSETLLSDWPAANSVPAPRRA
PPVDPEILRTMKKVGFIGYAPNPRTKLRNQIPYRLKEMDNEFDSFSQVPESPIGREEEPH
LYMVAKKYRKVTIKYSKLGLEDFDFKHYNKTLFAGLEPHIPNAYCNCMIQVLYFLEPVRC
LVQNHLCQKEFCLGCELGFLFHMLDLSRGDPCQGSNFLRAFRTIPEASALGLILADSDEA
TGKVNLGRLIQSWNRFILTQLHQETQEQEGPQAYRGAGGSSFASAGESVIGQLFSCEMEN
CSMCRCGKETVRVSSTLLFTLSYPDSTEKSIKDYEFVQILKRSICLEQSTQAWCENCEKY
QPTVQTRNIRCLPDVLVINCEVNSSKEADFWKVQAEFAFQKALMKRGGLDVPKGKDLVLS
DWKELGSAEPGQPYPSMEELKNVWIPHAIRMRLTKNKELDVCNWSESDEPSVSDDPDSVH
VYDLMATVVHILDSRTGGSLVGHIKVGETYHQRKEGVTHQQWYLFNDFLIEPVDKWEAVQ
FDMSWKVPAVLYYARRNLNAKYNLAIKNPIEASVLLAEASLARKQRKCHATFIPLMLSEM
PQAGDLVGLDAEFVTLNEEEAELRSDGTKSTIKPSQMSVARITCVRGQGPNEGVPFIDDY
ISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDVGVKFVGHGLQKDF
RVINLMVPKDQVIDTVYLFHIPRKRMISLRFLAWYFLDLKIQAETHDSIEDARTALQLYC
KYLALSQGGAEPDEVRKVLKGLYEKGRKMDWKVPEPDGPGSPKHAAVYPPVLAL
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atgaactttgaaggcctggacccatcatcactggcggagtacgcctcccccctgcacccc
gccctggagcctgtgctggacccccacctgcccgccaccctgctgcagaatgtggagctg
gaccccgatggtgtggccctagacggcatggccgtgcctgagtcagtgcacatcatggag
ggtgtctactcggagctgcacacggccatgtccgaagtgggcgtccctgtctcagttgcc
cactttgacctgcatgaggaaatgctctgggtcgggaaccacgggggccatgccacctca
ttcttcgggcccacgttggagcgatactcctccttccaagtgcacggcagcgacgacgtt
cgccacatccagagcctggagaatggcgtcctcttcctcaccaagaccaaccttaagtac
atgtcccgaggtggcctcatcattttcgactacctcatggatgagagtgaggacatgcac
agcctcctgctgacagaccccagcacgctgttggtcggcggcctgcaaaaccatgtcatt
gagatcgatctcaacacggtccaggagactcagaagtacacggtggaggtgcccggcatc
accatcatgcgccagtccaatcgcttcttcttttgcggacacacatcaggaaaggtgtca
cacgtggaccccgccttcctgcgcttcgtccccacttacacctcccgcctcgccatcgtc
tcccagactggccagggccagttctgtgaacccacgggcctggccaacccagccgatatc
ttccatgtcaccacggtggggcagctgctgatgacatttgatgtgtcgggcaccaagcag
gcactggcctttggtgactcagagggctgtgttcacctctgggctgactcgcccgaggcc
acattcaatgctttctcccgggagaccgacttcgccctgccctgcatcgtggactccctg
ccccacctggactggggccaggacctcgtacccctctcgctcatcccagtgcccctcacc
agcgagaccctgctgtccgactggcccgccgccaactcggtgcccgccccccggcgggcg
ccacccgtggaccccgagatcctgcgcaccatgaagaaggtgggcttcattggctatgcc
ccaaacccccgcaccaagcttcgcaaccagatcccataccggctcaaggagatggacaac
gagtttgacagcttcagccaagtgcctgagtctcccattggccgtgaggaggagccacat
ctctacatggtggccaagaagtacaggaaggtcaccatcaagtactcaaagctggggctg
gaggacttcgacttcaagcactacaacaagacgctgttcgcggggctggaaccccatatc
cccaatgcctactgcaactgcatgatccaggtgctttacttcctggagcctgtgcgctgt
ctggtgcagaaccacctgtgccagaaggagttctgcctgggctgtgagctcggcttcctc
ttccacatgctggacctgtcccgtggggacccctgccagggcagcaacttcttgcgcgcc
ttccgcaccatcccggaagcctcagcactgggtctgatcctggctgactcagatgaagcc
acagggaaggtgaacctgggccgcctaatccaaagctggaaccgcttcatcctcacgcag
ctgcaccaagagacccaggagcaggaggggccacaggcctatcggggcgctggtggcagc
agcttcgcctcagctggggagtcagtcatcgggcagctcttcagctgtgagatggagaat
tgcagcatgtgccgctgtggcaaggagacggtgcgcgtgtcctccaccctgctcttcacc
ctctcctaccctgacagtactgagaagtccatcaaggactacgagtttgtccagatcttg
aagaggagcatctgcctggagcagagcacgcaggcctggtgcgagaactgcgagaagtac
cagcccactgtccagacccggaacatccggtgcctgcctgacgtcctggtcatcaactgt
gaggtgaacagctccaaggaggctgacttctggaaggtgcaggccgagtttgccttccag
aaggcgctgatgaagcgaggaggcctggatgtgcccaagggcaaggacctggtgctcagt
gactggaaggagctaggcagtgccgagcccgggcagccctacccctccatggaggagctg
aagaacgtgtggatcccccacgccatccgcatgcggctgaccaagaacaaggagctggat
gtctgcaactggagtgagagtgatgagccaagtgtgtcggatgaccctgactcggtgcat
gtatacgacctgatggccacggtggtgcacatcctggactcccgcactggcggcagcctc
gtggggcacatcaaggttggggagacctaccaccagaggaaggagggcgtcacacatcag
cagtggtacctcttcaatgacttcctcatcgagcctgtggacaagtgggaggctgtgcag
ttcgacatgagctggaaagtgccagctgtgctatactatgcccggcgcaacctcaacgcc
aagtacaacctcgccatcaaaaacccgatcgaggccagtgtactcctggcggaggcatcg
ctggcccgcaagcagcgcaagtgccacgccacctttatcccgctcatgctcagtgagatg
ccccaggctggcgacctggtggggctggatgctgagttcgtcaccctcaacgaggaggag
gctgagctgcgcagtgacgggaccaagtccaccattaagcccagccagatgtcagtggca
cggatcacgtgtgtgcgtggccagggccccaacgagggtgtccccttcatcgatgactat
atctccacccaggagcaggtggtggattacctgacccagtactcagggatcaagccaggg
gacctggacgccaagatttcctccaagcacctcaccacactcaagtccacctacctgaag
ctgcgcttcctcatcgacgtgggggtcaagttcgtaggccacgggctgcagaaggacttc
cgggtcatcaacctcatggtgcccaaggaccaggtgattgacacagtctacctgttccac
atccccaggaagaggatgatctcgctgcgcttccttgcctggtacttcctggacctgaag
atccaggcggagacgcatgacagcattgaggacgcgcgcacggcgctgcagctgtactgc
aagtacctagcactgagccagggtggtgctgagcccgacgaggtgcgcaaagtgctcaag
gggctgtatgagaaaggtcgcaagatggactggaaggtgcccgagcctgatggcccgggc
agccccaaacatgctgctgtgtacccgcctgtgctggcgctttga
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