Gavialis gangeticus (Gharial): 109299824
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Entry
109299824 CDS
T07453
Symbol
COL9A1
Name
(RefSeq) collagen alpha-1(IX) chain
KO
K08131
collagen type IX alpha
Organism
ggn
Gavialis gangeticus (Gharial)
Pathway
ggn04510
Focal adhesion
ggn04512
ECM-receptor interaction
ggn04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109299824 (COL9A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109299824 (COL9A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
109299824 (COL9A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ggn00535
]
109299824 (COL9A1)
Proteoglycans [BR:
ggn00535
]
Extracellular matrix (ECM) proteoglycans
Others
109299824 (COL9A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
109299824
NCBI-ProteinID:
XP_019375879
LinkDB
All DBs
Position
Unknown
AA seq
907 aa
AA seq
DB search
MKSNWQLPAFLYICSFLGSLVSATVQHQTRFPVTFASNQNTDLCPTIRIGQDDLPGYDLI
SQFQIDKAASRGVIQRVVGSTALQVAYKFGSNVDFRIPTRALYPNGLPDEYSFLTTFRMT
GSTLQKYWSIWQVQDSSGKEQVGVKLNGPAKSVEFSYTGLDGSLQTANFLHLPFLFDSQW
HKLMISVEKTSVTLFIDCLKVESLNIKPKGKINTDGFAVLGKLNNNPKISVPFELQWMLI
HCDPLRPQRETCSELSSRTWVRSFLILNQTTVESTSSASSSGLTISQTAVLRRVGTEQHR
PLEAALIQRIQGLTGPDGSFGPSGRKGQKGEPGLPGARGLPGKGILGSAGPPGAAGLPGE
VGRVGPPGDPGKRGLPGLPGPPGQRGTIGLHDGDPLCPNACPPGRPGHAGLSGMKGHKGA
KGEPGEPGRQGHKGEEGDQGILGDVGTQGPPGPPGSRGMIGIMGPKGDKGARGLDGDPGP
RGLPGAPGDQGQRGSLGELGPKGDRGPPGPRGITGLPGPKGQPGLPGVDGREGIPGMPGA
KGEPGKPGAPGDAGLQGLPGLPGFPGAKGVSGPKGNRGPPGVPGLMGNSGKPGEQGVAGA
VGPIGPRGPPGGRGDPGPAGPPGPPGKQGSEGDIGLPGLPGPPGLLGVKGDRGTVGEPGP
KGEQGTAGSEGEPGGRGDLGDMGLPGPKGSAGNPGEPGSRGPEGSRGLPGMEGPRGSPGP
RGMQGEQGAPGLPGSQGPAGREPTDQHIKQVCMRVMQEQLAQLAASLRRPEFGATGLPGR
PGPPGAPGPAGENGFPGQLGPRGLPGLKGPPGEIGRKGPKGDAGEKGDRGFPGRGPKGLP
GTTGLPGEPGKPSYGREGRDGLQGPPGIAGQPGVPGPPGPPGPPGYCEPSSCTVQAGQRA
GKNVKGP
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagcaactggcaacttccagctttcttgtacatatgtagttttctggggtctttg
gtgtcagctactgttcagcatcaaacaagatttccagtcacttttgcttctaaccaaaac
accgatctttgcccaacaatcaggattggccaagatgacttgccaggttatgacctgatt
tctcagttccagatagataaagctgcctcccgaggagttatccagagagtggtaggctcc
acagctttacaggtggcttataaatttggcagcaatgtcgacttcaggatcccaaccagg
gctttgtatcccaacggattgcctgatgaatattcctttctaactacttttcggatgact
ggaagcacacttcagaaatactggagtatttggcaggttcaggattcttcaggaaaagaa
caagttggagtgaagcttaatggtccagctaagagtgttgagttttcttatacgggactg
gatggaagtctccagactgcaaactttttgcatttgccttttctgtttgattcccaatgg
cacaagcttatgatcagcgtggagaagaccagtgtcactctttttattgactgccttaag
gtagaatccttaaacataaaaccaaagggcaaaatcaacactgatggctttgctgtgctg
ggaaaacttaacaataatcctaaaatttcagttccgtttgaactccagtggatgctgatt
cattgcgaccctctgcgaccacaaagagaaacatgcagtgaactttcatcccggacctgg
gtaaggagctttctcatccttaatcagactactgtggagtctacatcttcagcctcttcc
tctgggttaacaataagccagacagctgtgctgagacgggtggggacggagcagcaccga
ccgctggaagctgctttgatccagaggatacaaggactgacaggacctgatggatcattt
ggcccatctggtcgaaaaggacaaaagggtgaacctggattacccggagctcgtgggctt
ccaggtaagggaattcttggatcagctggtccccctggtgcagcaggacttcctggtgaa
gttggccgtgttggtccacctggtgatcctgggaagagaggactaccaggcctaccagga
ccaccaggccaaaggggaacaattgggctacatgatggagatccactgtgtcccaatgct
tgtccacctggtcgtccaggacatgctggcctgtcaggaatgaagggtcataaaggtgca
aaaggagagcctggtgaaccaggaagacagggtcataagggtgaggaaggagaccaagga
atcctaggtgatgttggaactcaaggccctccaggccctccaggttcaagaggtatgatt
ggtataatgggaccaaaaggtgacaagggtgctcgtgggctggatggtgacccgggtccc
cgaggtctccctggtgcacctggtgaccaaggacagagaggttctcttggagagttaggt
ccgaagggagacagaggccctcctggtccaagaggaataactggtctccctgggccaaaa
ggacaacctggcttgccaggagttgatggccgggaagggatccctggaatgcctggagca
aagggtgaaccaggtaaacctggcgctccaggggatgcaggacttcagggactgccaggt
ttacctggttttccaggtgcaaaaggtgtttctggaccaaagggtaatagaggaccccct
ggagtaccaggtttgatgggaaattctggtaaacctggagaacaaggggtagcaggggca
gtgggaccaataggaccaaggggaccaccaggtggtagaggtgacccaggtcctgctggt
cctccaggaccaccagggaaacagggctctgaaggggatataggacttccaggactccct
ggtcctccaggcctccttggtgttaaaggtgacaggggcacagttggtgagccaggtcct
aaaggtgaacaaggtactgctggatctgaaggagaaccaggaggaaggggtgacctgggt
gatatgggactgccgggcccaaagggatctgctggtaaccctggagaacctggttctcgg
gggcctgaaggaagtcgtggattgcctggcatggaagggccacgtggatcacctggacct
cgtggtatgcagggtgagcaaggtgctccgggtctgcctggcagccagggtccagccggt
agagagccaacagatcagcacattaagcaggtttgcatgagagtcatgcaagaacaactg
gctcagctggcggccagtcttaggaggcctgaatttggtgctacaggtcttccaggtaga
cctggaccacctggtgctcctggacctgctggagaaaatggcttcccaggacagcttgga
cctcgtggtctaccaggcctcaaaggacctcctggtgagattggtcgcaaaggtccaaaa
ggtgatgctggtgaaaagggggacagaggatttcctggcagaggacccaaaggcttacct
ggaacaacaggtcttccaggtgaaccaggcaaacccagctatggtagggaaggacgtgat
gggctacaaggcccaccaggtatagctggtcagcctggagttcctggtcctccaggtcct
cctggtcctccaggatattgtgagccatcatcttgcacagtgcaggctggacagagagct
ggtaagaatgtgaaagggccatga
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