KEGG   Gossypium hirsutum (upland cotton): 107890768
Entry
107890768         CDS       T04793                                 
Name
(RefSeq) splicing factor SF3a60 homolog
  KO
K12827  splicing factor 3A subunit 3
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107890768
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ghi03041]
    107890768
Spliceosome [BR:ghi03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    107890768
 Complex B
    107890768
 Complex C
   U2 SnRNP specific factors
    107890768
SSDB
Motif
Pfam: SF3a60_Prp9_C SDE2_2C SF3A3 SF3a60_bindingd LLPH Vesi_VP2 Desulfoferrod_N EF-hand_15
Other DBs
NCBI-GeneID: 107890768
NCBI-ProteinID: XP_016670789
UniProt: A0A1U8I4Y2
LinkDB
Position
D09:48642662..48649091
AA seq 509 aa
MSSTLLEVTRAAHEDVERLERLIVKDLQNDPPTTKDGLYQSHRVRNNIDTIISTAEKLVE
IYEDKDNARKDEIAALGGQTATGVNVFSAFYDRLKEIREYHRKHPAARVVDANEEYEDLL
KEEPVIEFSGEEAFGRYLDLHELFNQYINSKFGAKIEYSAYLDVFSQPHNIPWKLKSTRQ
YREYMENLLEYLIYFFQRTEPLQDLDRIFSKLEAEFEEQWANGQVQGWEKQGQENEDDPA
QLTMIDLDYYSTVEELMEVGPEKLKEALAALGLKTGGTVQQRAERLLLTKHTPLEKLDKK
HFAKGSHGPRQNGSTAVSQDINSLKQIALVEAKMKKLCDLLSKTIEQTKENVVKKQALTY
EEMEQEREEEETQVDTESDDEDQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICG
NYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITNIQEAQELWEKIRERQGVNKWR
PDLEEEYEDKEGNIYNKKTYTDLQRQGLI
NT seq 1530 nt   +upstreamnt  +downstreamnt
atgtcctcaactctactagaggtgactcgggctgctcacgaagatgtggaacggcttgag
cggctcatagtgaaggacttgcaaaatgatccacctaccacgaaagacggattgtatcaa
agccaccgcgtccgcaataatatcgacaccatcatctccaccgcggagaagctagttgaa
atatatgaagataaagacaatgctaggaaagacgaaatcgctgctcttggaggtcaaacg
gctactggagttaatgtctttagtgctttttatgatagattgaaggagattcgtgagtac
catagaaaacacccagctgctcgtgttgtcgatgctaatgaagagtatgaggatttactt
aaggaagaaccagtcattgagttcagtggcgaggaagcctttggtcggtacctggacctg
cacgaattgttcaatcagtacattaattctaaatttggagccaaaattgaatactcggct
tacctcgatgtcttttcacagccacacaatatcccttggaaattgaagtcaacaaggcaa
tacagggagtacatggagaatcttctggagtatcttatttacttctttcagaggactgaa
ccactgcaagatcttgacagaatcttttctaagctcgaggctgagtttgaggagcagtgg
gctaatggccaggtacaaggatgggagaagcagggtcaagaaaatgaagatgatcctgcc
cagcttaccatgattgatcttgattattacagcacagttgaagagctgatggaagttggt
ccagaaaagttaaaggaggcattggcagccttaggactaaaaactggtggtactgtccag
cagcgggcagagaggcttttgctcaccaagcacacaccgctggaaaagctggacaagaaa
cattttgcaaaaggctcacatggacctcgacaaaatgggtctactgcagtttcacaagac
attaacagtctgaaacagattgcattagtggaggccaagatgaagaaactctgtgattta
ctgagtaagacaattgaacaaacaaaagaaaatgtagtaaagaagcaagcgttgacatat
gaggaaatggaacaagaacgggaggaggaagagacacaagttgacactgaaagtgatgat
gaagatcaacagatctataatcctcttaaattgccaatgggttgggatgggaagcctatc
ccttactggctttacaaacttcatggtcttggtcaggagtttaagtgcgagatttgtggg
aactacagctactggggtcgtcgggccttcgagaggcatttcaaagaatggcggcatcaa
catggcatgcgatgccttggtatccctaacactaagaacttcaatgaaataaccaatatt
caggaagcacaagaactgtgggagaagataagagaacggcaaggagtgaacaagtggcgt
ccggatcttgaagaagaatatgaagataaagagggcaacatctataacaagaagacgtat
accgatctgcagcggcaaggactgatttaa

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