Gossypium hirsutum (upland cotton): 107892165
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Entry
107892165 CDS
T04793
Name
(RefSeq) SWI/SNF complex component SNF12 homolog
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
107892165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107892165
03036 Chromosome and associated proteins [BR:
ghi03036
]
107892165
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
107892165
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
107892165
PBAF complex
107892165
GBAF(ncBAF) complex
107892165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
YEATS
Motif
Other DBs
NCBI-GeneID:
107892165
NCBI-ProteinID:
XP_016672661
UniProt:
A0A1U8I347
LinkDB
All DBs
Position
D09:12174706..12177861
Genome browser
AA seq
527 aa
AA seq
DB search
MSVNNSNPPKSIGASSSPFGNASQAQTQAQLSAGFQNQYQLSQAQALAHAQAQAQAQLAH
AQFQAHLQAQGLSLNQAQNAGIGNLGTSSPSMSTPGGASAKRILQRPPMRPPGVPVTNTM
SPLRIMDLTTAARKKKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAALTRKKVDIQ
EALKNPPCVQKTLRIYVFNTFANQMQTIPKKPNAEPPTWTLKIIGRILEDGVDPDQPAFV
QKTNALYPKFSSFFKRVTISLDQRLYPENHIIIWEQARSPAPHEGFEVKRKGDKEFTVNI
RLEMNYAPEKFKLSSALVEVLGIEVDTRPRIIAAIWHYVKARKLQNPNDPSCFNCDAQLM
KVFGEEKVKFTMVSQKISQHLSSPPPIHLEHKIKLSGNNPAGSACYDVLVDVPLPIQRDL
SALLANAEKSKEIEQCDEAICASIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSRDLK
LASGEASRSSERERRSDFFNQPWVEDAVIRYLNRKPGAGGSDAPGST
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtgaataacagtaaccctcctaagagcattggggcgtcttcgtcgccctttggt
aatgcttcacaagcacaaacacaagcacaactcagtgctggttttcaaaatcagtatcag
ctatcccaagctcaggcccttgctcatgctcaagctcaagctcaagcgcagttagctcat
gcccaattccaagcacacttacaagctcaaggtttgtcccttaaccaagctcaaaatgcc
ggcattgggaacttaggtacgtcttcgccatccatgtcgactcctggcggtgcaagtgcc
aagaggatccttcaaaggccccctatgcgtcctcctggtgttcctgtgacaaatacaatg
tctcctttgagaataatggatcttacgaccgccgcacgtaaaaagaagcagaagcttccc
gagaaacagctgcaggatagagtggcggcaattcttcctgaatctgctctgtatacccag
cttcttgagtttgaggcacgtgtcgatgctgccttaactcggaaaaaagttgacatccaa
gaagcccttaagaatccaccttgtgttcaaaaaacacttcgaatatatgttttcaacacg
tttgctaatcagatgcaaacaatcccaaagaagcctaatgcagagccccctacatggacc
cttaagataataggaaggatcttggaagatggggtagatccagatcaacctgcatttgtt
caaaaaacaaacgccttataccctaagttttcatctttcttcaagagagtgacaatttcc
ttggatcagagactatatccggaaaatcatatcattatatgggagcaggctcgatcgcct
gctcctcatgaaggttttgaggtaaagagaaaaggggataaggaattcaccgtgaatatt
aggttggaaatgaattatgcgccagagaaattcaagctttcttcagctttagtggaagtc
cttggtattgaggttgatacacgccccagaattatagctgcaatttggcattatgtgaag
gctagaaaacttcagaacccaaatgatccatcttgctttaattgtgatgcacaacttatg
aaagtttttggggaagaaaaagtgaaatttaccatggtttcgcagaagatatcgcagcat
ttgtcttcgccgccacctatacatttggagcataagatcaagctttccgggaacaatcct
gctgggtctgcatgctacgatgtgttagttgatgtgccgttgcctatacagagggatttg
tctgctctgttagcaaatgcagagaagagcaaagagattgaacagtgcgacgaagcaata
tgtgcttccataaggaaaattcatgagcaccgtagaagacgtgcattctttctagggttc
agccaatctcctgtggaatttatcaatgctttaatcgagtctcagagccgggatcttaaa
ttggcatctggggaagcaagtcgaagttctgaaagagagcgacgatcagatttcttcaac
caaccatgggttgaagatgccgttatccgttatctgaatcgcaagccaggtgctggtgga
agtgatgcgccaggaagcacatga
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integrated database retrieval system
