KEGG   Gossypium hirsutum (upland cotton): 107893411
Entry
107893411         CDS       T04793                                 
Name
(RefSeq) exosome complex exonuclease RRP46 homolog
  KO
K12590  exosome complex component RRP46
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107893411
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ghi03019]
    107893411
Messenger RNA biogenesis [BR:ghi03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     107893411
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 107893411
NCBI-ProteinID: XP_016673885
UniProt: A0A1U8I6M9
LinkDB
Position
A13:complement(106289492..106291883)
AA seq 242 aa
MEVDREDGRSQNQLRPLACSRNILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA
CIEVIWKPKTGQIGKPEKEYEMILKRTLESICILTVNPNTTTSIIVQVVNDDGALLPSAI
NAACMALVDAGIPMKHLAVAICCCLAKSGYVILDPTKLEEQKMKAFAYLVFPNSVRSVLP
EGSLRVEGEPIENGIITSVTHGIMSVADYFYCLERGRAASVKLSDFLRRNLQQQSTDSSK
AG
NT seq 729 nt   +upstreamnt  +downstreamnt
atggaggtcgatagggaggatggacgctcgcagaaccaattgagacctctcgcatgttct
cgcaacattctccatcgtgctcatggctctgccagttggtctcaaggagatacgaaagta
cttgctgctgtttatgggccgaaagctggaactaaaaagaatgagaaccctgagaaagct
tgcattgaagttatttggaagccaaaaacaggacaaatagggaaaccggaaaaggaatat
gagatgatattgaagaggaccctagagagtatttgtattttgacagttaatcctaatact
acaacgtcaattatagtccaggttgtcaacgatgatggtgctcttctcccgagtgccata
aatgcggcatgtatggcccttgtagacgcagggattcctatgaagcatcttgctgtcgca
atatgttgttgtctggccaagagtggatatgttatattggatcccaccaagctagaagag
cagaaaatgaaggcttttgcatatttagtcttcccaaactctgtccgttcggtccttcct
gaaggatcactaagagtggaaggtgaacctattgaaaatgggattattacatctgtcact
catggtataatgtcagtggctgattatttttactgcttagagcgagggcgagctgcaagt
gtcaaattgtctgattttctcaggaggaacttgcaacagcagtcaactgattcatccaaa
gctgggtga

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