Gossypium hirsutum (upland cotton): 107904814
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Entry
107904814 CDS
T04793
Name
(RefSeq) SWI/SNF complex component SNF12 homolog
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
107904814
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107904814
03036 Chromosome and associated proteins [BR:
ghi03036
]
107904814
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
107904814
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
107904814
PBAF complex
107904814
GBAF(ncBAF) complex
107904814
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
107904814
NCBI-ProteinID:
XP_016686793
UniProt:
A0A1U8JDL6
LinkDB
All DBs
Position
D07:58661122..58663873
Genome browser
AA seq
536 aa
AA seq
DB search
MSMNGNNPPKNLSSSPFGNAGMVPPPMPGNPAFSQAQLSAGFQAQYQLSQAQALAQAQSK
AQAQAQAQAHAQLQAHLQAQGLSLNQAQNAGFGTLGSSSPSMSTPGSASAKRILQRPPMR
PPGVPMMNTMSPLRTMELTAAARRKKQKLPEKQLQDGVAAILPESALYTQLLEFEARVDA
ALARKKVDIQEALKNPPCVQKTLRIYVFNTFANQIKTIPQKPNAEPPTWTLKIIGRILED
GVDPDQPGFVQRTNLLYPKFSSFFKRVTISLDQRLYPDNHIIIWEHARSPTPNEGFEVKR
KGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQSPNDP
TSFNCDAQLHKVFGEEKVKFTMVPLKISQHLSPPPPIHLEHKVKLSGNSPVGNVCYDVLV
DLPFPIQRELSALLSNAEKSKEIETCDEAICAAIRKIHEHRRRRAFFLGFSQSPVEFINA
LIESQSLDVKLVAGEASRSSEKERRSDFFNQPWVEDAVIRYLNRKPAAGSDAPGSI
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atgtctatgaatggcaataatcccccgaagaacctatcttcgtcaccctttggtaatgcg
gggatggtgcctcctcctatgcctggaaaccctgcattctcacaagctcaactcagcgct
ggttttcaagctcagtatcagctatcccaagctcaggcccttgctcaggctcagtcgaaa
gctcaagctcaagctcaagctcaagctcatgcccaactccaagcacacttacaagcccaa
ggtttgtcccttaaccaggctcagaatgctggctttgggacattaggttcgtcttcaccc
tccatgtctactcctggcagtgcaagtgcaaagaggatccttcaaaggccccccatgcgc
cctcctggtgttcctatgatgaacacaatgtcacctttgagaacaatggaacttacagcc
gctgcacgtagaaagaagcagaagcttcctgagaaacaactacaggatggagtggcagca
attcttcctgaatctgctttgtatacccagcttcttgagtttgaggcacgtgttgatgct
gcattagctaggaaaaaagttgacatccaggaagcacttaagaacccaccttgtgttcag
aaaactcttcgaatatatgttttcaacacttttgctaatcagattaagacaattccgcag
aagcctaatgcagagcctcctacgtggacccttaagattattgggagaatcctggaagat
ggagtagatccagatcaacctggatttgttcaaagaacaaatctcttatacccgaagttt
tcatctttcttcaagagagtgacaatttcattggaccaaagactatatccagataatcat
atcattatatgggagcatgctcgatcaccgacacctaatgaaggttttgaggtgaagaga
aaaggggataaggagttcactgtgaacatacggttggaaatgaattatgtacctgagaaa
tttaagctttcttctgctttaatggaagtccttggtattgaagttgatacgcgccccaga
attattgctgcaatttggcattatgtgaaggctagaaaacttcagagcccaaatgatccg
acttcctttaattgtgacgcacaacttcataaagtttttggggaagaaaaagtaaaattt
accatggttccactgaagatatcacagcatttgtctccaccaccacccatacatttggag
cataaggtcaagctttcggggaatagtcctgttgggaatgtatgctatgatgtgttagtt
gatttgccctttcccatacagagggaattgtcagctcttttgtcaaatgcagagaagagc
aaagagatcgagacttgtgatgaagcaatatgtgctgccataaggaaaattcatgagcac
cgtagaaggcgtgccttctttctaggtttcagtcaatcaccagtggagtttattaatgct
ttaattgagtctcagagcctggatgtgaaactggtagccggggaagctagtcgaagttct
gaaaaagagcgacgatcagatttttttaaccaaccatgggttgaagatgctgttatccgt
tatttgaatcgcaagccagctgctggaagtgatgcaccaggaagcatatga
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