Gossypium hirsutum (upland cotton): 107905709
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Entry
107905709 CDS
T04793
Name
(RefSeq) LOW QUALITY PROTEIN: tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107905709
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107905709
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
107905709
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_11
TPR_17
TPR_16
TPR_14
TPR_8
TPR_CcmH_CycH
TPR_19
TPR_12
TPR_9
TPR_6
TPR_7
BTAD
DUF6584
Motif
Other DBs
NCBI-GeneID:
107905709
NCBI-ProteinID:
XP_016687914
UniProt:
A0A1U8JHW8
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All DBs
Position
D05:15947959..15956705
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AA seq
1176 aa
AA seq
DB search
METTGELEGEERRRPVELLESNPDDSSLHFQLGVCLWETQTEKEKAAEHWVISVKQNPKN
AAAFTYLGHYYATVSVDIPRAIKCYQRALSLNPDDSDSGEALCDLLDSQGKETLEVAICK
DASHNSPRAFWAFRRLGFLQVHQKRWSEAVQSLQQAIRGYPTSPDLWEALGLAYHRLGMF
TAAIKSYSRAIELEDTRVFALIECGNIFLMLGSFRKGIEQFQQALKISLQNMSALYGLAS
GLLGMAKECRNSGAFRWAASLLEDARKVAEASIKSAGNSSCTWKLHGDILLTYAQVFPWT
EESQSLEYNAETFKKSVYSWKNTCGLAAISARNSYQRALHLAPWQANIYIDIAISSNLIS
SFNQDNTLDKCTWKLPEKLTXGALALEGENSEFWVALSCLSECNALKQHSLIRGLQLDVS
LAYAWAYLGKLYREENEKKLARQAFDCARGIDPSLALPWAGMSADAHTGDSTPDDTFESC
LRAVEIFPLAEFQIGLAKLALLSGNLSSSQVFGAIQQAVQRAPHYHESHNLNGLVHEARM
QFQAAIASYRLARYAINISLGTVLKSHLKDISTNLARSLSKAGNAIGAVQECEDLKKEGM
LDAEGLQIYAFSLWQLGENDLALSVTRALAASVSTMDRISAAVSVSFICRLLYYISGPDL
AIGSILKMPKELFHSSKISFIVSAINALDQNNRLESIISSSRYFLASQEEITGMHYLIAL
SKLIKHGTKHLLGFQNGVNHLRKALHMYPNSILIRNLLGYILLCSEVWGNSHVSSRCSIV
DDSDSKNKEGLKLAWEISSAGAVACHAIGNSEPRFSFPTCSCQCTSSGAMQELQKCLRRE
PWNHNARYLLILNLLQKAREERFPVNICIVLERLISVALSNEFYSGKEAICQYQKFQIYL
CASEILLQRGNIMGCIDQAKNASALSLPDSFQFFGHLLLCRAYAAEGNLKFSKEEYERCL
ELKTDFLVGWLCLKLMESQYEEQPASNIFELAFKEGSEGRNNSWNMWMAVYSLGMGLICL
WNQDFLSAEEFLEQPCSLTSAESCIFLCHGVTSMEIARRYHDSQFLSSAIRSLSKAHITS
SVPIPIVSALLAQAEGSIGSRKKWERNLRLEWFSWPPEMRPAELFFQMHLLARQIASESD
SSSRVEGCQSPLQWVLRAIHTNPSDLRYWKVLPKLL
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atggaaacaacgggtgagctggagggagaagaaagaaggcgaccggtggagttgctcgaa
agcaatcccgatgactcttcccttcattttcaacttggagtatgcttgtgggagactcag
acggagaaagagaaagcggcggagcattgggtgatttccgttaaacaaaaccctaagaac
gcagctgcctttacctacttgggccattactacgccaccgtttcggtcgatatccccaga
gccatcaagtgttaccagcgagctttatcccttaatcccgatgattccgattctggggaa
gctttgtgtgatttgttggatagtcaaggcaaggagaccttggaggtcgcaatttgcaaa
gatgcttctcacaactctcccagggctttctgggctttccgccgattgggttttctccag
gtgcatcaaaagagatggtctgaagctgtacaaagtcttcaacaagctattcggggctat
ccgacttctcctgatttgtgggaagctcttggtcttgcctaccaccggcttggcatgttt
accgctgctattaagtcctattcgcgtgcaattgaattggaagatacaagagtctttgcg
ctaattgaatgtggaaacatctttttgatgcttggttcctttagaaagggaattgaacaa
tttcagcaagcactaaagatctcgctacaaaacatgtctgcactctatggacttgcgtct
ggactgctaggtatggcaaaagaatgtagaaattcaggagcgttcagatgggcagcttca
ttattagaggatgcacgtaaagttgcagaagcaagcatcaaatcagctggaaattcatca
tgtacatggaagttgcatggtgatattctgcttacatatgcacaagtttttccatggaca
gaggagagccagagtttagaatacaatgcagaaactttcaagaagtccgtatattcatgg
aagaatacctgtggtttggctgctatatctgccagaaactcttatcaacgagctttgcac
ttagctccatggcaggctaatatctacattgacattgcaattagttctaatcttatctct
tctttcaatcaggataacacacttgataagtgtacttggaagttacccgagaagttgaca
nctggggctttagcactagagggtgagaactctgagttctgggtggctttgagctgtttg
tctgagtgtaatgcacttaagcagcactcgttaatcaggggactgcagttggatgtgtct
ttagcctatgcttgggcatatcttggaaagctttatagagaagagaatgagaaaaaattg
gctaggcaagcatttgactgtgctagaggtatagatccatcgctggcattaccatgggct
gggatgtcagctgatgctcatactggggattcaacaccagatgatacttttgagagctgc
ctacgtgctgtggagatatttccgcttgcagagttccaaattggacttgctaagcttgct
ttactttctgggaacctttcttcttcgcaggtatttggagctatccagcaggctgtgcaa
cgggcaccgcactaccacgaatcccataatttaaatgggctagttcacgaggcacgtatg
cagtttcaagctgccattgcttcttacaggctagctcgctatgccatcaacatttcttta
ggcactgtcctcaaatctcacttgaaagacatatcaactaatttggctagatcacttagt
aaggcagggaatgccattggtgctgtgcaagaatgtgaagacttgaagaaagaaggtatg
cttgatgctgaaggtttgcaaatatatgctttctccttatggcaattgggtgagaatgat
ttagccctctctgtgactagggccctggctgccagcgtttctaccatggataggatatct
gcagctgtgtctgttagtttcatttgtagattgctgtactacatttctggaccggattta
gcaattggtagcattctgaaaatgccgaaggaattatttcatagttcaaaaataagcttt
attgtgtctgccattaacgctctggatcagaataataggctagaatcgattatttcaagc
agtcgatactttcttgcatcacaggaggagatcactgggatgcattatctaatagcactt
agcaaactgattaaacatgggacaaagcacctccttgggtttcagaatggagtcaaccat
cttagaaaagctcttcacatgtaccctaacagtattttaataaggaacctacttggttat
attttgctatgcagtgaagtatggggaaatagtcatgtgtcaagtagatgttccatcgtt
gacgattctgactctaagaacaaagagggcttaaaattggcctgggagatttccagtgct
ggggcagttgcttgccatgcgatcggcaatagtgaaccgagattctctttcccaacatgt
agctgtcaatgcacgagttctggagctatgcaagaattgcagaagtgcttacggcgagag
ccatggaaccataatgcccgatacttgcttatccttaatcttttacagaaagcacgtgaa
gagagatttcctgtaaacatctgtattgttcttgagcgtctcataagtgtggctctttct
aatgagttctattctggaaaagaagccatttgtcaatatcagaagtttcagatttattta
tgtgcttctgagattcttttgcaaagggggaatataatgggctgtattgaccaagccaaa
aatgcttcagcactttctcttccggatagcttccagttttttggacacttactattatgt
cgtgcctacgctgcagaaggaaatttaaaattttctaaagaagagtatgagaggtgcttg
gagcttaagacagattttctagttggttggctatgcctaaaactaatggaatctcagtat
gaagagcaacctgcttcaaatatttttgagttagccttcaaggaaggctcagaagggagg
aataattcatggaatatgtggatggctgtatatagtttagggatgggcctgatatgttta
tggaatcaggactttctttcagcagaggaatttctggaacagccttgttcgttaaccagt
gctgagagctgcattttcctttgtcatggtgtcacttctatggagattgcaaggaggtat
catgattcgcaatttttatccagtgccataaggagtctcagcaaagctcatataacttct
tcggtcccaatacccattgtctcagcattgttagcccaagcagaaggaagcattggttct
aggaaaaagtgggagagaaatcttcgccttgaatggttttcttggccaccagaaatgaga
ccagcagagctgttttttcaaatgcatttgcttgcaagacagattgcatccgagtctgac
agttcatccagggtggagggctgccaaagtcccctgcaatgggttcttcgagccattcac
acaaacccttctgacttgagatattggaaagttctgccaaagcttttgtaa
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