KEGG   Gossypium hirsutum (upland cotton): 107913690
Entry
107913690         CDS       T04793                                 
Name
(RefSeq) splicing factor SF3a60 homolog isoform X1
  KO
K12827  splicing factor 3A subunit 3
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107913690
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ghi03041]
    107913690
Spliceosome [BR:ghi03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    107913690
 Complex B
    107913690
 Complex C
   U2 SnRNP specific factors
    107913690
SSDB
Motif
Pfam: SF3a60_Prp9_C SDE2_2C SF3A3 SF3a60_bindingd LLPH Desulfoferrod_N Vesi_VP2
Other DBs
NCBI-GeneID: 107913690
NCBI-ProteinID: XP_016697838
UniProt: A0A1U8KA47
LinkDB
Position
D11:complement(51929296..51935691)
AA seq 509 aa
MSSTLLEVTRAAHEDVEQLERLMVKDLQNDPPTAKDKLYQSHRVRNNIDTIISTTEKLIE
IYEDKDNARKDEIAALGGQTATGINVFSAFYDRLKEIREYHRKHPAARLVNVNEEDEALL
KEEPVIEFSGEEAFGRYLDLHELFNQYINSKFGSKIEYSAYLDVFSQPHNIPWKLKSTRQ
FREYMENLLEYLIYFFQRTEPLQDLDRIFSKVEAEFEEQWANGRVQGWEKQGQENEDDPA
QHTMIDLDYYSTVEELMEVGPEKLKEALASLGLKTGGTVQQRAERLFLTKHTPLEKLDKK
HFAKGSHGPRQNGSTAVSQDINSLKHIALMEAKMKKLSDLLSKTIEQTKENVVKKQALTY
EEMEQEREEEETQVDTESDDEDQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICG
NYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITNIQEAQELWEKIRERQGVNKWR
PDLEEEYEDKEGNIYNKKTYTDLQRQGLI
NT seq 1530 nt   +upstreamnt  +downstreamnt
atgtcgtcgactctactcgaggtgactcgggctgctcatgaagatgtggaacagcttgag
cggctcatggtgaaggacctgcaaaatgatccgcctactgccaaagataaattgtatcag
agccaccgcgtccgcaataatattgacaccatcatctccaccactgagaagctaattgag
atatacgaagataaagacaatgctaggaaagatgaaattgctgctcttggaggtcaaacg
gctactggaattaatgtctttagtgcattttatgatagattgaaggagattcgtgagtac
catagaaagcacccagctgctcgacttgtcaatgttaatgaagaggatgaggctttactt
aaggaagaaccagttattgagttcagtggcgaggaagcctttggtcggtacctggacctg
cacgaattgttcaatcagtacattaattctaaatttggatccaaaattgaatactcagct
tacctcgacgtcttttcacagccgcacaatatcccttggaaattgaagtcaacaaggcaa
ttcagggagtacatggagaatttgctggagtatcttatttacttctttcagaggactgaa
ccactgcaagatcttgacagaatcttttccaaggttgaggctgagtttgaggagcagtgg
gctaatggccgggtacaaggatgggaaaagcaaggtcaagaaaatgaagatgatcctgcg
caacataccatgattgaccttgattattacagtacagttgaagagcttatggaagtgggt
ccagaaaagttaaaggaggctttggcatcattaggactaaaaactggtggtactgtccag
cagcgtgcagagaggcttttcctaaccaagcacaccccactggaaaagctggacaaaaaa
cattttgcaaaaggctcacacggacctcgacaaaatgggtctactgcagtttcacaagac
attaacagtctgaaacatattgcattgatggaggccaagatgaagaaactctctgattta
ctgagtaagacaattgaacaaacaaaagaaaatgtggtaaagaagcaagcattgacgtat
gaggaaatggaacaagaacgtgaggaggaagagacacaagttgacacggaaagtgatgat
gaagatcaacagatctataatcctcttaaattgccaatgggttgggatggcaagcctata
ccttactggctttacaaacttcatggtcttggtcaggagtttaagtgtgagatttgtggg
aactacagctactggggccgtcgggcttttgagaggcatttcaaagaatggcggcatcag
catggcatgcgatgccttggtattcctaacaccaagaactttaatgaaatcaccaatatt
caggaagcacaagaattgtgggagaagatacgagaacggcaaggagtgaacaagtggcgt
ccagatcttgaagaagaatacgaagataaagagggcaacatttataacaagaagacgtat
accgatctgcagcggcagggactgatttaa

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