Gossypium hirsutum (upland cotton): 107915277
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Entry
107915277 CDS
T04793
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH12
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107915277
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107915277
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107915277
Spliceosome [BR:
ghi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
107915277
Complex C
U5 SnRNP specific factors
107915277
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_11
Motif
Other DBs
NCBI-GeneID:
107915277
NCBI-ProteinID:
XP_016699932
UniProt:
A0A1U8KBS5
LinkDB
All DBs
Position
D10:complement(56763637..56771231)
Genome browser
AA seq
2177 aa
AA seq
DB search
MAHLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRVY
KGRPPELDEKLKKSKKKKERDPLAEPVPVRQSKRRRLREESVLTVTEEGVYQPKTKETRA
AYEAMLSLIQQQLGGQPLNIVSGAADEILAVLKNEGIKNPDKKKEIEKLLNPIPSQVFDQ
LVSIGKLITDYQDGGDGAGGAAANGDEGLDDDVGVAVEFEENEDEEEESDLDMVQEDEED
DDDGVENGSGAMQMGGGIDDDDMHEANEGMNLNVQDIDAYWLQRKISQAYDQQIDPQQCQ
KLAEEVLKILAEGDDREVETKLLVHLQFDKFSLIKYLLRNRLKVVWCTRLARAEDQEERK
KIEEEMMSLGPDLAAILEQLHATRATAKERQKNLEKSIREEARRLKDESGGDGDRERRGY
ADRDAEGGWLKGQRQLLDLDSLAFEQGGLLMANKKCDLPVGSYRHHSKGYEEVHVPALKA
KPLESNERLVKISEMPDWAQPAFKGMQQLNRVQSKVYETALFSADNILLCAPTGAGKTNV
AVLTILQQLALNMDADGSINHGNYKIVYVAPMKALVAEVVGNLSHRLEAYGVTVRELSGD
QTLTRQQIDETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIV
ARTVRQIETTKEHIRLVGLSATLPNFEDVALFLRVNFEKGLFHFDNSYRPVPLSQQYIGI
TVKKPLQRFQLMNDICYEKVMAVAGKHQVLIFVHSRKETAKTARAVRDTALANDTLSRFL
KEDAASREILQSHTDMVKSNDLKDLLPYGFAIHHAGLARTDRQIVEELFGDGHVQVLVST
ATLAWGVNLPAHTVIIKGTQIYSPEKGAWTELSPLDVMQMLGRAGRPQYDSYGEGIIITG
HSELQYYLSLMNQQLPIESQFISKLADQLNAEIVLGTVQNAREACNWIGYTYLYIRMLRN
PTLYGLPADVLSRDLTLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASYYY
ITHGTISTYNEHLKPTMGDIELCRLFSLSEEFRYVTVRQDEKMELAKLLDRVPIPIKESL
EEPSAKINVLLQAYISQLKLEGLSLTSDMVYITQSAGRLLRALFEIVLKRGWAQLAEKAL
NLCKMVTKRMWNVQTPLRQFNGIPNEILMKLEKKDLAWDRYYDLSSQEIGELIRYPKMGR
TLHRFIHQFPKLNLAAHVQPITRTVLRVELTITPDFQWEDKVHGYVEPFWVIIEDNDGEY
ILHHEYFLLKKQYIDEDHTLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPISFRHLILP
EKYPPPTELLDLQPLPVTALRNPSYEALYQDFKHFNPVQTQVFTVLYNTDDNVLVAAPTG
SGKTICAEFAILRNHQKGPDSTLRVVYIAPLEAIAKERYHDWERKFGKGLGMRVVELTGE
LAMDLKLLEKGQVIISTPEKWDALSRRWKQRKFVQQVSLFIVDELHLIGGQGGPVLEVIV
SRMRYIASQVEKMIRIVALSTSLANAKDLGEWIGASSHGLFNFPPGVRPVPLEIHIQGVD
IANFEARMQAMTKPTFTAIVQHAKGGKPAIVYVPTRKHVRLTAVDLMSYSKVDNEDEPAF
RLRSAEELKPFVDKISEETLRTTLEYGVGYLHEGLSSLDQEVVSQLFEAGWIQVCVMSSA
LCWGVPLSAHLVVVMGTQYYDGRENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP
RKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVATVIENKQDAVDYLTWTFMYRRLTQNPN
YYNLQGVSHRHLSDHLSELVENTLNDLEASKCITIEDDMDLSPLNLGMIASYYYISYTTI
ERFSSSLTSKTKMKGLLEILASASEYANLPIRPGEEEVLRRLINHQRFSFDNPRCTDPHV
KANALLQAHFSRQHVGGNLSLDQREVLLFATRLLQAMVDVISSNGWLSLALLAMEVSQMV
TQGMWERDSMLLQLPYFTKELAKRCQENPGKNIETIFDLVEMEDDERRELLQMSDLQLLD
IAKFCNRFPNIDLSYEVIDSDNVRAGEYVTLQVTLERDLEGKTEVGPVDAPRYPKAKDEG
WWLVVGDTISNQLLAIKRVSLQRKAKVKLEFAAPTEATEKAYTLYFMCDSYLGCDQEYSF
TVDVKEAARPGEDSGSE
NT seq
6534 nt
NT seq
+upstream
nt +downstream
nt
atggctcatcttggaggcggtgctgaggcacacgctcgtttcaagcagtatgagtatagg
gcgaattcgagtttagttcttaccactgattctcggcctcgtgatactcatgagccgacc
ggagagccggaatctctctggggaaagattgaccctaggtcatttggtgaccgtgtttat
aaaggtaggccaccggagttagatgagaagcttaagaagtctaagaagaagaaagaacgt
gatccgcttgccgagccggttccggtcaggcaaagtaagaggcgtaggttgcgtgaggag
agtgttttgactgttacagaggaaggggtttatcagccaaaaacgaaggagactagggcc
gcttatgaggctatgttgagtttgattcagcagcagttgggtggacagccacttaatata
gttagtggtgcagcggatgagatattggctgtgcttaagaacgaggggattaagaatccg
gataagaagaaggagatagagaagttgttgaatccgattccgagtcaggtttttgatcag
cttgtttcgatagggaagttgattacggattatcaagatggtggtgatggagctgggggt
gcggcagcaaatggggatgaaggtcttgatgatgatgtgggtgtggcagtcgagtttgaa
gaaaatgaagatgaggaagaggagagtgatcttgacatggtacaggaggatgaggaggat
gatgatgacggtgtggaaaatggttccggggctatgcagatgggtggtggaattgatgat
gatgatatgcatgaggctaatgaggggatgaatttgaatgtccaggacattgatgcttat
tggcttcaaaggaaaatctcccaggcttatgatcaacaaattgacccgcaacagtgtcaa
aagcttgccgaagaggtgcttaagattcttgcggagggtgatgacagggaggttgagaca
aagctattggtgcatctccagtttgataagttcagcctcatcaaataccttctgcggaat
cggctgaaggttgtctggtgcacccgcttggctagggctgaagaccaagaagagaggaag
aagattgaggaggaaatgatgagcttgggtccagatttggctgcaattcttgagcagttg
catgcgacaagggcaactgcaaaagaaaggcagaagaacttggagaaaagtatcagagaa
gaggctcgccgactgaaggatgagagtggtggagatggggatagggagaggaggggctat
gctgacagagatgcggagggtggttggctgaagggtcagcgccagttgcttgatctggac
agtcttgctttcgaacagggtggtcttttgatggcgaataaaaaatgtgatcttcctgtg
ggttcctataggcatcatagcaaggggtatgaggaggttcatgtgccagcactgaaggcg
aaaccattggaatcgaatgagaggcttgtaaagatatctgagatgccagactgggcacaa
ccagcgttcaaaggtatgcaacagttgaacagggttcagagcaaagtgtatgagactgcg
cttttctcagcagataacatcctactgtgtgctcccactggagcagggaaaactaacgtt
gctgtgctcaccatattgcagcaacttgccttgaatatggatgctgatggttcaattaac
catggcaattacaagattgtctatgtggcacccatgaaagctctagttgctgaagttgtt
ggtaatctttctcatcgtttagaggcatatggtgtgactgtgagggagcttagtggagac
caaacactgactcgccaacaaattgatgagactcagattatcgtgacaactcctgagaaa
tgggatattattaccagaaagtctggagatcgcacatacacacagctggtgaaacttctt
attattgatgaaatccatcttcttcatgataatagagggcctgtgcttgaaagtattgtt
gccaggactgttcggcaaattgaaaccacaaaagagcacatcagattggtggggctgtca
gctacacttccaaactttgaagatgtagcattatttttgcgggttaattttgaaaaagga
ctgttccattttgacaatagctacagacctgtccccctctctcaacaatatattgggatc
acagtaaagaagccactgcagaggttccagttgatgaatgatatttgttatgaaaaggta
atggcggtggcagggaagcatcaagttcttatttttgttcattcaaggaaggaaactgct
aaaacagctcgtgctgtacgagacactgcacttgcaaatgatacccttagtagattcttg
aaagaggatgctgctagtcgtgagattctccagagtcacacagatatggttaaaagcaat
gatttgaaggatctgctaccttatggttttgccatccatcatgctggcttggcaaggact
gatcgtcaaattgttgaagaactctttggagatggacatgtacaagtgttggtatcaact
gcgacgcttgcttggggtgtgaacttgcctgctcatacagtcattattaaagggacccag
atttatagcccagaaaaaggagcatggactgagttaagccctctagatgtgatgcagatg
ctgggtcgtgctgggaggcctcaatatgattcatatggggaagggatcatcatcactggc
cacagtgaacttcagtactacctttcattgatgaatcagcaactgcccattgagagccag
tttatttctaaattggctgatcagttgaatgcagagatcgttcttggaaccgttcagaat
gcaagagaagcctgcaattggattggatacacatacttgtatattcgcatgttgcggaat
cccacactttatggcttaccggctgatgttctttcaagagatttaactttggaggagagg
agggctgatttgattcattcggctgcaactatcttagacaagaataatttggtgaagtat
gacagaaaaagtgggtacttccaagtgactgatttgggtcgcattgctagctactattat
attactcatggcacaatctctacgtataatgagcatttgaagccaaccatgggggatata
gaactttgccgactgttttcactcagtgaagaattcaggtatgtgacagttagacaagat
gagaagatggagctggcaaagcttttggaccgtgttcccattccaatcaaggaaagcctg
gaagagcctagtgctaaaatcaatgttttgctgcaagcatatatctcacagttaaagctt
gaaggcctttcattgacatctgacatggtgtacataactcagagtgcaggacgtcttctc
cgagcgctatttgagattgtcttgaaaagaggttgggctcagttggctgagaaggctttg
aacttgtgtaaaatggttaccaagaggatgtggaatgttcaaacacccttgcggcaattc
aatggtatcccaaatgaaattcttatgaagttggagaagaaagatttggcctgggatagg
tactatgatctgtcatctcaggagatcggagaactgatccgttaccccaaaatgggaagg
acacttcacaggttcattcaccagttcccaaagctaaaccttgcagcccatgttcaacca
attacacgaactgtcttgagggttgaacttacaataacaccagattttcaatgggaggat
aaggttcatgggtatgtggagccattttgggtgattattgaggataatgatggcgagtat
attcttcaccatgagtactttttgctgaagaaacagtatattgatgaggaccacactttg
aacttcacagtgccaatttatgaaccattgccacctcaatatttcattcgtgttgtctca
gataagtggcttgggtctcagactgtgttgcccatctctttcaggcatctcattctacca
gagaagtaccctccaccaactgagctgttggatttacagcctttgcctgtgactgcattg
aggaatccatcttatgaagctttgtatcaagattttaagcatttcaatcctgttcaaacc
caggtctttactgttctgtataatacggatgacaatgttctagtggctgcaccaacaggg
agtgggaagaccatttgtgctgagtttgctatattaaggaatcatcaaaaaggacctgat
agtaccctgcgagtagtatatattgcacctcttgaggctattgccaaggagcgataccat
gattgggagaggaagtttggcaagggtcttggaatgcgggtggttgagttaactggggaa
ttggcaatggaccttaagttgcttgagaaaggtcaagtaatcataagtactccagagaaa
tgggatgccctttctcgtcgctggaaacagaggaagtttgttcagcaggttagccttttc
attgttgatgagcttcatttgattggtggtcaaggtggtcctgtgttagaggttattgtc
tctaggatgagatatattgctagtcaggttgaaaagatgatacggattgtggctctctca
acttctcttgcaaatgctaaggaccttggagaatggattggagctagttctcacggcctc
tttaatttcccccctggagttcgtcctgtacctctagaaatacacattcaaggggtggat
atagccaattttgaagcaaggatgcaagcaatgactaaaccaactttcactgccattgtc
caacatgccaaaggtgggaagccagctattgtgtatgttcctacaaggaagcatgttaga
ctcactgctgtggacctaatgagttactccaaagtggataatgaagatgagccagctttt
cgtttgcgatctgctgaagaacttaagccttttgttgacaaaattagtgaagaaacgttg
agaaccactctagagtatggagttggctacttgcatgagggtttaagcagtttggatcaa
gaagttgtttcacagctgtttgaagctggatggattcaagtttgtgttatgagcagtgca
ttatgttggggagttccattatcagcgcacttggtggttgtgatggggactcaatattat
gatgggagggaaaatgctcacacagattacccggttacagatttgttacagatgatgggc
catgcgagtcgtcctctacttgataattctggcaaatgtgtcatcctctgtcacgcccct
cgtaaagagtattacaagaagttcttgtatgaagcattccctgttgagagccatttgcac
cattttctacatgataacttcaatgctgaaattgttgctacagttattgagaacaagcaa
gatgctgtggattatcttacttggactttcatgtataggaggctcacccaaaatccaaat
tactacaatctccagggtgtaagtcacaggcatctctctgatcacctttctgagctcgtt
gagaacacattaaatgatctggaagcaagtaaatgtatcactatagaagatgacatggat
ctttctcctttgaatcttggcatgatagcctcttattattacatcagttacactaccatt
gagcgtttcagttcttccttgacttccaagacgaagatgaagggtcttctggagattctg
gcctcagcttctgagtatgctaatcttcccatacgacctggggaagaggaggttcttaga
agattaattaatcaccagaggttttcctttgacaatccaaggtgcacagatccacatgtc
aaagcaaatgccctacttcaggcccacttctctcggcagcatgtgggtgggaacctatca
ctagaccagcgagaggtgctcttgtttgctactaggctacttcaagccatggttgatgtt
atttcgagcaatggttggttgagccttgctcttcttgcaatggaggtgagccaaatggtg
acacaaggaatgtgggagcgagactctatgcttctacagctcccatacttcactaaggaa
ttagccaagagatgccaagagaaccctgggaagaacattgagaccatttttgatctggtg
gagatggaagatgacgagaggcgtgagctgttacagatgtctgatttgcagcttctggac
attgcaaagttctgcaatcgtttccccaacatcgatttatcatacgaggtgattgatagt
gacaatgtaagggctggggaatatgtcaccttgcaggttaccctcgagagggatctagag
gggaagacagaggttggaccggttgatgctcccaggtacccgaaagcaaaagatgaaggg
tggtggctggttgtcggtgacaccattagtaaccagctgcttgctatcaaaagggtgtct
cttcagaggaaagcgaaggtgaaacttgaatttgctgctcccactgaagctacagagaag
gcatacactttgtatttcatgtgtgattcttacctaggttgtgatcaggagtatagcttc
actgttgatgtcaaagaagctgctcgccctggtgaagacagtggctcagagtag
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integrated database retrieval system
