Gossypium hirsutum (upland cotton): 107927750
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Entry
107927750 CDS
T04793
Name
(RefSeq) uncharacterized protein LOC107927750 isoform X1
KO
K14311
nuclear pore complex protein Nup188
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107927750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107927750
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
107927750
BRITE hierarchy
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Ortholog
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GFIT
Other DBs
NCBI-GeneID:
107927750
NCBI-ProteinID:
XP_040938535
UniProt:
A0ABM2Z7W7
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Position
A12:complement(7102305..7118956)
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AA seq
1960 aa
AA seq
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MAATTKSVDHSLWWEPFSSLLTDLENASPSDDLPEPLAKKLKENHDWFVETVARFKSPNE
KSKEALMSSEKIKIGPHELTVKPDFRDKALQVSSYLCLDEVQSYILVDRYLERGNVAENY
IVHDPIHVVLLQYFIERQCLLKCTRQILMHALYLGNSLKEESLIREEALKLISDGLEGKL
ISVLEVLMSCSHPEQMDVDLFTLWAEETLLEDNLVLDIIFLIYYESLCTCTAERWKNLCL
LYKGTLSGSYNFGKLAISPEALSSFYQAKIQLLLILIEALNLENLLQMVHDEIPFRQGAC
GFTLTDVREIDALMSGFDVFEIREGGPLILAWAVFLCLMSSLPQKEESNEFMEIDHVGYV
RQAFEASSLSYFLEILQSGILKESDGPVAGYRSVLRTFISAFIASYEISLQEEDGTLNLI
LGILCYVYRGEESLCIQFWDRASFIDGPIRCLLCNLEGEFPFRTVELLRLLSSLCEGSWP
AECVYNFLDKSTGISSLFDITSESSLDNVSQIVETQHPVPIPGIDGLHIPSRTHGHVLKV
VDGRTALVRWEHTKSAVFVLLLRLAQIPYLENNEEAFLTLDLLSRMVSCNTAVCFALMDS
CNICHLQATGMNGQIESNVWVVEIISNMVRNLSPNPSGAALMSMAFVILAKMLKCCPSNV
AAVALKANIFDVASNSSTFNIGWNGLSSGSWLLSGKLAKMLLIDSEQNDYDCPLTISVLD
FTMELVRTGVEDDIVVSLIVFSLQYILVNHEYWKYKVKNTRWKVTLKVLEVMKTCILATA
SSEKLTDVIRDLLLYDSSIHNTLFRIMCTTSEALERLYLNRLIELVEIQGLQLAISSALD
ISYVMLTKISKDMTSSIPAFHQAVLSSTTKPISVIAAVISLISFFRDPAIQVAAAKLLAM
LLQMAEPHPFINSCFCPDDKRMADLRLSINSILLEHWILNDDLFIAILNLLASAARFQPA
FLLAIFDTKEDTAVQLANIGGVKQTTNEPLSGSLGSETCSLVNAILQFVESSNDVINSNP
CVLLNALNFLKALWHGAGQYTTILERLKSSEKFWKQLSNSIFQSAALEVPVLKSIKESEA
SLLGHKYRCQSAILETMAYDVFLMKKLLYAESLVKDPSESNKKIEADNNVMKSILSNWCK
SSVLGSLIKSYTSCKYDNEIYFHAKVALSLLTVHIMGKLVAGDAGSLSVSLVEKIRHVYK
KLTVQPAFSKLLAQYSLRGYSEGKELKALILSDLYYHLQGELEGRKMSAGPFKELSQFLI
ESKMVKIYENKCSLDLFSNADDVHVFDLGRIQADLGLDMWDYSEWRTSKGIAETMLSCMQ
KANSMVLIGNSKLSSLKALITVLTVYEDSSLEKMTEVGGKIPDQLIFSCMEHICRTFLDT
LEPLSRVPDVSEDVLDFLTSQADLLLHLTRSVRKSLSMSVCLLLLKTSGTGLKMLNDLRT
MVSGVNNTMKLLIMLILLSMEFCWLDSHISGVKDKESIEGFAEISNVSLGLLPILCNCVT
VAECHSLCLTALDLTLKCFLTPDTWFPIIHKHLQLQHVVLKLQDKNSFGSVPVLLKFFLT
IARVRGGAEMLLNAGFFSSLKLLFADMSDGRVSSVINSGKKLSTLSDKIEKPQLIWGLGL
AVITAMVHSLGDSSLSIDIVANVIPYLFSEKAHLISYFLSAPDFPSDDHDKKRPRAQRTW
TSLSKLMETEQTLMLMCILAQHWNTWVKAMKDTDSQLREMSIHLLAFISRGNQRLGEAPS
RTPPLLCPPILKDELDCCNKPSFVNSKNGWFALSPLGCISKPKFSGISTTALVIKDQATG
SNNHVSQTYFSDSVAIQIYRIAFLLLKFLCLQAEGAAKRAEELGYVDLAHFPELPMPEIL
HGIQDQAIAIVTELCETNRSKQIHSEVHQVCLLLLQTIEMALYLELCVLQICGIKPMLGR
VEDVSKEVKLLMKATEGHAFLKGSMKSLSQIISLVYPGLP
NT seq
5883 nt
NT seq
+upstream
nt +downstream
nt
atggcggccaccactaagtccgtcgatcactctctttggtgggagccgttctcttctctt
ctcaccgacctcgagaatgcctctccttccgacgacctcccggaacccctagcgaagaag
ttgaaagaaaaccacgattggttcgtggagacagttgctaggtttaaatcgccgaatgag
aagtcgaaggaggctttaatgagctctgagaaaatcaagattggtccacatgagttgacc
gttaagcctgatttcagagataaggctttgcaagtcagctcgtatttgtgtttggatgag
gtgcagtcgtacattctcgttgataggtatctcgagcgcggaaatgttgctgagaattat
atagttcatgatcccattcatgtggtattgctgcagtattttattgagcgccagtgcttg
ttgaagtgcacaaggcagatcctaatgcatgctttatatttgggaaatagcttgaaagaa
gagagtttgattagggaggaagcactaaagctgatttctgatggattggaaggaaaacta
atatctgtcttggaagttctcatgtcttgcagtcatcccgagcagatggatgttgatctt
ttcaccttatgggctgaggagacactacttgaagacaatttggttttggacattattttt
ctcatttattatgagtcactttgtacttgtactgctgaaagatggaaaaatttatgcttg
ctttataaggggaccttatcagggtcttataactttggaaagctagcaatatcacctgaa
gcactatcttctttttatcaagccaaaattcagctgttacttatcctcatagaagctctg
aacctggaaaatcttcttcaaatggttcatgatgaaattcctttcaggcagggagcttgt
ggttttaccttgactgatgtccgagagattgatgctctgatgtccggcttcgatgtcttt
gagattagagaaggtggcccattgattcttgcttgggcggtgtttctttgtctgatgtca
tcactccctcaaaaagaggaaagtaatgaattcatggagattgatcatgttgggtatgtt
cgccaagcttttgaagcttcatctttgagttatttccttgaaatccttcaaagtggcatc
ttgaaggaatcagatggacctgttgcaggttatcgaagtgtcttgagaacttttatttct
gcatttattgcatcttatgaaattagtcttcaggaggaggatggtacccttaatttgata
ctgggtattctttgctatgtttatcggggagaggagtcactttgtattcaattttgggac
agagcaagtttcatcgacggtcctattcggtgccttctctgtaacttagagggtgaattc
ccttttaggactgtggaacttctacgacttctatcatctctatgtgagggaagttggcct
gcagaatgtgtgtataactttttagataagtccactggtatatcgtctttgtttgacatt
actagtgaatcctcattggataatgtgtctcaaattgttgaaactcagcatccagtgcct
attcctgggattgatggtttgcacattcctagtagaactcatgggcacgttctgaaagta
gttgatgggagaactgctcttgtgcgctgggagcatacaaaatcggccgtgtttgttctg
ctccttcgtttggcccagattccatacttagaaaacaatgaagaagcatttcttaccctt
gacctactcagccgaatggtgtcctgcaacacggctgtatgttttgctttgatggatagt
tgcaacatctgtcatctccaagcaactggcatgaacgggcagatagaaagtaatgtgtgg
gtggttgagatcattagcaatatggttagaaatttgtctcctaatcccagtggtgctgca
ttgatgtccatggcttttgtaatattggcaaagatgctgaaatgttgcccttctaatgtt
gctgcagtagccttgaaagcaaatatatttgatgtggcttcaaattcaagcaccttcaac
ataggttggaatggtctatcaagtggatcatggttgctatctggaaagttggcaaagatg
cttttaatcgatagtgagcagaatgattatgactgcccattaacaatatcggtgctggat
tttaccatggagcttgtaaggactggtgtagaagatgatattgtcgtgtctttaattgtg
ttttccctccagtatattctagtaaatcatgagtactggaaatataaagtgaagaatact
cgttggaaagtaacattgaaggtgctggaagtgatgaaaacgtgcattttagcaacagct
tcctctgaaaagctgactgatgtaatacgggatttgctactctatgattcttcgatccac
aacactctctttcgtataatgtgtacaacttctgaagctttggagagactttatctcaac
cgcctcatagaattggtcgagattcagggtttacaacttgctataagttctgctttggat
atttcatatgtgatgcttaccaaaatctcaaaggatatgacatcaagcattccagctttt
caccaagctgtcctctcttcaacaaccaagccaatatctgttattgctgctgtcatatca
ttgatatccttttttcgtgatccggcgatacaggttgctgctgctaaactactggcgatg
ttgttgcagatggcggaaccacatccttttataaattcatgcttctgtcccgatgacaag
cggatggcagatttaaggctttctattaatagcattctacttgaacactggatactgaat
gatgatctctttattgccatactgaatttgcttgcttctgcagctcgtttccagcctgct
ttccttcttgctatttttgacacaaaggaggatacagctgttcaactggctaatattggt
ggtgtgaagcagacaacaaatgaacctttgtctggttccctgggctctgaaacatgtagt
cttgtaaatgccattctccaatttgttgaaagctctaatgatgttattaatagcaatccc
tgtgtactactgaatgcacttaacttcttaaaggcactgtggcatggggctggtcagtat
acaactattttggagaggctgaagagctctgagaagttctggaaacaattatcgaactct
atctttcaaagtgctgccttggaagttcctgtgctcaaaagcataaaagaatcagaggct
tcactcctgggacacaaatatcgatgtcaatctgctattttggaaacaatggcatatgat
gtgttcttgatgaaaaagttgttatatgctgaatcacttgtcaaggatccctctgaatca
aataagaagattgaagctgataataatgttatgaagagtatcttgtcaaattggtgtaag
agctctgttcttggaagcttgatcaaatcatatacatcttgtaaatatgacaatgaaata
tattttcatgcaaaggtcgcattgagtttactcactgtgcacataatgggaaaactagta
gctggtgatgctggaagtttgtctgtatccttagtggagaagattcgccatgtgtataaa
aagttgactgttcagcctgctttttccaaattactggcccagtactcactgcgtggttat
agcgaagggaaggagctgaaagctttaatactgagtgatctctattaccatctgcaagga
gagcttgaaggccgtaaaatgagtgctggaccctttaaagaactttcccagtttctgata
gagtcaaagatggtgaagatttatgagaacaagtgcagtcttgatcttttttcaaatgct
gatgatgtccatgtgtttgatcttggacgcatacaagcagatttgggattagatatgtgg
gattattctgaatggagaacatctaaaggaattgcagaaacaatgctgagctgcatgcag
aaagcaaactcaatggtgttgattggaaattcgaagctttcttcactgaaagcgttaatt
accgtcttaaccgtgtatgaggacagttcgctggaaaaaatgactgaggttggagggaag
attcctgatcagctgattttttcatgcatggagcatatatgccgaactttccttgacact
ttagaacctttgtctcgagtccctgatgtttctgaagatgtccttgatttcctcacttca
caggcagacttgcttcttcatctcacaagatctgttcggaaaagcctgtccatgtctgtt
tgtcttctcctcttgaagacttcaggcactggtcttaaaatgctaaatgaccttagaacg
atggttagtggggtgaataacacaatgaagcttttgataatgttgattctattgtcaatg
gagttctgctggcttgattcccatatatctggtgtgaaagacaaagaatctattgaaggg
tttgctgagatttctaatgtgagcctcggtctgttacccatcttgtgcaactgtgttact
gttgctgaatgtcattccctctgcctgactgctttggacttgacactaaaatgttttttg
acacctgatacttggtttcccatcatccataaacatctccagttacaacatgttgttctg
aaacttcaagataagaattcttttggatcagttcccgttcttttgaagttcttcttgacc
attgcgcgtgtaagaggaggtgctgaaatgcttcttaatgctggttttttctcgtctctc
aaacttttatttgctgacatgtcagatggtcgggtttcctctgttattaattctggcaaa
aaactctccactttatctgacaaaatagagaagcctcaactcatttggggacttggctta
gctgtcatcacagcgatggttcattctttaggagacagttctttgagtattgatattgtg
gccaatgtgataccatacttattttctgagaaagcccatcttatttcttattttctcagt
gcaccagattttccatctgatgatcatgacaagaaaagaccacgtgcacaaaggacttgg
acttctctttctaaactaatggagaccgagcaaactctcatgctgatgtgcatcttggca
caacattggaatacttgggttaaggctatgaaggatacagattcacagttaagagagatg
agtattcatctcctggcctttattagccgtggaaaccagcgcctcggagaggctcctagc
cggactccgcctctcttatgccctcctattctgaaggacgagcttgattgctgcaataaa
ccttcatttgtaaacagcaaaaatggatggtttgctctttcaccccttggttgcatctca
aaaccgaaattttctgggatatcaacaactgctcttgttatcaaagatcaagcaactgga
agtaataaccatgtttcacaaacatacttctcagactcagttgccattcagatataccgg
attgcatttcttttattgaaatttctctgtttacaagctgagggtgctgctaaacgggct
gaagagttgggatatgttgatcttgctcattttccagaacttccaatgcctgagatttta
cacgggatacaggaccaagcaattgctatcgtcacggaattatgtgagactaacagatct
aagcagattcattcagaggtccatcaagtctgtctcctactgcttcaaacaattgagatg
gccttgtacttggaactttgtgtcttacagatttgtggaataaaacctatgctaggtcgt
gtggaggacgtttcaaaggaagtcaaactattgatgaaagctacggaggggcatgctttt
ctcaaaggatcaatgaagtccctgagtcagataatatcacttgtgtatcctggtttgcca
taa
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