KEGG   Gossypium hirsutum (upland cotton): 107930276
Entry
107930276         CDS       T04793                                 
Name
(RefSeq) splicing factor SF3a60 homolog isoform X1
  KO
K12827  splicing factor 3A subunit 3
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107930276
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ghi03041]
    107930276
Spliceosome [BR:ghi03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    107930276
 Complex B
    107930276
 Complex C
   U2 SnRNP specific factors
    107930276
SSDB
Motif
Pfam: SF3a60_Prp9_C SDE2_2C SF3A3 SF3a60_bindingd LLPH Desulfoferrod_N EF-hand_15
Other DBs
NCBI-GeneID: 107930276
NCBI-ProteinID: XP_016717379
UniProt: A0A1U8LVX0
LinkDB
Position
A09:78844933..78851378
AA seq 510 aa
MSSTLLEVTRAAHEDVERLERLIVKDLQNDPPTTKDGLYQSHRVRNNIDTIISTTEKLVE
IYDDKDNARKDEIAALGGQTATGVNVFSAFYDRLKEIREYHRKHPAARVVDANEEYEDLL
KEEPVIEFSGEEAFGRYLDLHELFNQYINSKFGAKIEYSAYLDVFSQPHNIPWKLKSTRQ
YRKYMENLLEYLIYFFQRTEPLQDLDRIFSKLEAEFEEQWANGQVQGWEKQGQENEDDPA
QHTMIDLDYYSTVEELMEVGPEKLKEALAVLGLKTGGTVQQRAERLLLTKHTPLEKLDKK
HFAKGSHGPRQNGSTAVSQDINSLKQIALVEAKMKKLCDLLSKQTIEQTKENVVKKQALT
YEEMEQEREEEETQVDTESDDEDQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEIC
GNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITNIQEAQELWEKIRERQGVNKW
RPDLEEEYEDKEGNIYNKKTYTDLQRQGLI
NT seq 1533 nt   +upstreamnt  +downstreamnt
atgtcctcaactctgctagaggtgactcgggctgctcacgaagatgtggaacggcttgag
cggctcatagtgaaggacttgcaaaatgatccacctaccacaaaagacggattgtatcaa
agccaccgtgtccgcaataatatcgacaccatcatctccaccacggagaagctagttgaa
atatatgacgataaagacaatgctaggaaagacgaaatcgctgctcttggaggtcaaacg
gctactggagttaatgtctttagtgctttttatgatagattgaaggagattcgtgagtac
cacagaaagcacccggctgctcgtgttgtcgatgctaatgaagagtatgaggatttactt
aaggaagaaccagtcattgagttcagcggcgaggaagcctttggtcggtacctggacctg
cacgaattgttcaatcagtacattaattctaaatttggagccaaaattgaatactcggct
tacctcgatgtcttttcacagccacacaatatcccttggaaattgaagtcaacaaggcaa
tacaggaagtacatggagaatcttctggagtatcttatttacttctttcagaggactgaa
ccactgcaagatcttgacagaatcttttccaagctcgaggctgagtttgaggagcagtgg
gctaatggccaggtacaaggatgggagaagcaaggtcaagaaaatgaagatgatcctgcc
cagcataccatgattgatcttgattattacagcacagttgaagagctgatggaagttggt
ccagaaaagttgaaggaggcattggcagtcttaggactaaaaactggtggtactgtccag
cagcgggcagagaggcttttgctcaccaagcacacaccgctggaaaagctggacaagaaa
cattttgcaaaaggctcacatggacctcgacaaaatgggtctactgcagtttcacaagac
attaacagtctgaaacagattgcattagtggaggccaagatgaagaaactctgtgattta
ctgagtaagcagacgattgaacaaacaaaagaaaatgtagtaaagaagcaagcgttgaca
tatgaggaaatggaacaagaacgggaggaggaagagacacaagttgacactgaaagtgat
gatgaagatcaacagatctataatcctcttaaattgccaatgggttgggatgggaagcct
atcccttactggctttacaaacttcatggtctcggtcaggagtttaagtgtgagatttgt
gggaactacagctactggggtcgtcgggccttcgagaggcatttcaaagaatggcggcat
caacatggcatgcgatgccttggtatccctaacactaagaacttcaatgaaataaccaat
attcaggaagcacaagaactgtgggagaagataagagaacggcaaggagtgaacaagtgg
cgtccagatcttgaagaagaatacgaagataaagagggcaacatctataacaagaagact
tataccgatctgcagcggcaaggactgatttaa

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