Gossypium hirsutum (upland cotton): 107931171
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Entry
107931171 CDS
T04793
Name
(RefSeq) putative pectate lyase 21
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107931171
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
107931171
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
DUF1803
Motif
Other DBs
NCBI-GeneID:
107931171
NCBI-ProteinID:
XP_016718474
UniProt:
A0A1U8LYX8
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Position
A04:559286..561237
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AA seq
414 aa
AA seq
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MQCVNVNIKYSHLSIVAKSFLEMARFYLVSLLICLHATSTFSRHVPQQISEPVPRYSTRR
QLDMEQCRTGNPIDDCWRCDPEWEANRRKLADCAVGFGKNATGGRDGDVYVVTDSGNDDP
LNPTPGTLRHAVIQTEPLWIIFDHDMVINLREQLLINSYKTIDGRGHDIQITSGPCITLH
NVSNVIIHNIYIHKCLPSGYAMVWDPFPHSGSDGDGISIFGSRDVWIDHCTLANCYDGLI
DATYGSTSITISNNYMLHHNEVMLMGHSDEFLDDKNMQVTIAFNYFGEGLVQRMPRCRHG
YFHIVNNVYTGWQMYAIGGSANPTINSQGNVFVASDSNYSKEVTKRESYFDEWKNWNWRS
EGDMMLNGAFFTPSGEEASESYIKASSMVARPSSLLTKTAQFAGTLSCRKGYGC
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgcaatgtgtaaacgttaatataaaatatagtcatctctccattgtagctaaaagcttc
cttgagatggcaaggttctatctagtttccctactcatatgcttacatgctacctcaaca
ttctctagacatgttcctcagcaaatatcagaaccagtacctaggtactcaacaagaagg
cagttggatatggaacaatgtagaactggtaatcctatagatgattgctggaggtgtgac
cctgaatgggaagccaaccggagaaagctagctgattgtgcggttgggttcgggaaaaat
gccactgggggtcgagatggtgatgtttatgtagtcacggattcaggtaatgatgatccc
ctaaatccaactccaggtacattacgtcatgcagttattcaaactgaacctctgtggatc
atctttgatcatgacatggtcataaacctaagagaacaactgctgatcaactcgtacaag
accatcgatggaagaggacacgacatccaaatcacaagtggaccgtgcataacgttacac
aatgtgagtaatgtaatcatacataacatctacatacataagtgcttaccttcagggtat
gcaatggtgtgggacccgtttcctcacagtggatctgatggagatgggatctcgatattt
ggctcgcgggatgtgtggattgatcactgcacactagcaaattgttatgacgggctcatt
gatgccacgtatggttcaacatccataacaatctctaacaactatatgctacatcacaat
gaagtcatgcttatgggtcatagtgatgagttccttgatgacaagaacatgcaagtaaca
atagctttcaactactttggggaaggcctggttcagagaatgccgaggtgcaggcatgga
tattttcacattgttaacaatgtatacaccggttggcagatgtatgcaatcggaggaagt
gccaacccgacaatcaatagccaagggaatgtattcgtagcatcagatagcaattattca
aaggaggtgacgaaacgtgaaagctactttgatgagtggaagaactggaattggagatca
gaaggagatatgatgcttaatggtgcttttttcacaccttctggagaagaagcttcagaa
agctacataaaagcatcaagcatggtggcaagaccatcttcacttctaacaaagacagct
cagtttgctggtacccttagttgccgaaaaggctacggctgctaa
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