Gossypium hirsutum (upland cotton): 107935391
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Entry
107935391 CDS
T04793
Name
(RefSeq) probable pectate lyase 16 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107935391
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
107935391
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
107935391
NCBI-ProteinID:
XP_016723479
UniProt:
A0A1U8MD39
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Position
D10:928524..932358
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AA seq
385 aa
AA seq
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MASLSCLVLLSLIFSNFAHSLAGYYTSKPLAYNVPKKPMNVIDSCWRTKSDWAINRKALA
DCVVGYGKATLGGKYGAIYVVTSPYDDPVNPKPGTLRYGVIQSVPLWIIFARDMVIKLKN
ELIVNSFKTTDGRGAKVEIAYGPCITIQGVTNVIIHGISIHDCKPGMAGRVRSSPTHVGM
RGGSDGDAINVFASSNIWIDHCYLARAKDGLIDVIHASTSVTISNNYFTQHDKVMLLGHN
DKFIADKVMKVTLVFNHFGEGLIERMPRVRIGYAHVANNKYDEWKMYAIGGSANPTIFSE
GNNFVAPDNRSSKQVTKREATNWQNWKWQSSKDVFINGAYFVPSGYGSSAPLYTRVQSFT
VAPGYMVPVLTSNAGPLRCLVGKPC
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atggcttccctttcatgtcttgtattgctttcattaattttctcaaattttgctcattca
ctggcaggttattacacctctaaaccacttgcatacaatgtccctaagaaacccatgaat
gtaatagactcttgctggcgaaccaagtccgattgggccatcaatcgcaaagccttggcc
gattgtgtggtcggctacggtaaagcaactctaggagggaaatacggagcgatttatgtc
gttacgagcccttacgacgatcccgtcaaccctaaacccggcacgcttcgttatggtgtt
attcaatccgttcctctttggatcattttcgctcgagatatggtcatcaagctgaaaaac
gaattgatagtgaatagttttaagaccactgatggtagaggggctaaagttgagattgca
tatggaccttgcataacaattcaaggtgttaccaatgttataatacatggtattagcatt
catgattgtaagcccgggatggccggtcgggttaggagttccccgacacatgtagggatg
cgcggagggtctgatggggatgcaatcaacgtttttgcgtcttcaaacatttggatcgat
cattgttatctcgcacgggctaaggatggtcttatcgacgtgattcatgcttcaactagc
gtcacaatctctaataattatttcactcaacacgataaagtaatgttattaggacacaat
gacaagttcattgcggacaaagtcatgaaagttacattagtttttaaccatttcggtgag
ggtcttatcgagaggatgccgagggtcaggataggctatgcacatgttgctaacaacaaa
tacgacgaatggaagatgtacgccatcggtggtagtgcgaatccgaccattttcagcgaa
gggaacaacttcgtagcgcccgataatcgtagttccaagcaagttacgaaaagagaagca
acaaattggcaaaactggaaatggcaatcttcaaaggatgtgtttataaatggtgcatat
tttgtaccatctggttatggtagctctgctcctctctatactcgagttcaatcgttcacc
gttgctccgggatacatggtccctgttttaacatcaaatgccggtcctttacgttgtctt
gtcgggaaaccgtgctga
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