Gossypium hirsutum (upland cotton): 107935484
Help
Entry
107935484 CDS
T04793
Name
(RefSeq) tRNA-splicing endonuclease subunit Sen2-1
KO
K15322
tRNA-splicing endonuclease subunit Sen2 [EC:
4.6.1.16
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ghi03016
]
107935484
Enzymes [BR:
ghi01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
107935484
Transfer RNA biogenesis [BR:
ghi03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing endonuclease complex
107935484
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
DNA_processg_A
Motif
Other DBs
NCBI-GeneID:
107935484
NCBI-ProteinID:
XP_040965749
UniProt:
A0ABM3BFD0
LinkDB
All DBs
Position
D13:complement(280179..283118)
Genome browser
AA seq
253 aa
AA seq
DB search
MKPRWKGKGSQAKANADPMSKIVSQLQSSLIQSETRGLLSSCSVLVEVDAELADLLNRSC
FGRPRITAQEDKQWFQLDMEEAFYLCFSLKCLKVISENGYIKSNEELWDYLKSKKPVFPV
SYKVYSHLRHKNWVVRSGLQYGVDFVAYCHHPALVHSEYAVLVLSEGDNDLNGRLRVWSD
VHCTVRLCGSVAKTLLTVIVNSNNQGANSPSCLEHYTVEEQTITRWNPERSREDQTGPKN
GTKKIVKDWCNHI
NT seq
762 nt
NT seq
+upstream
nt +downstream
nt
atgaagcctagatggaaaggaaaaggctcacaagccaaagctaatgctgatcccatgtct
aaaattgtctcacaactccaatcctctttgatccaatctgagactcggggtttactctca
agctgcagtgtacttgttgaagtggatgctgaattagctgatcttctcaaccgttcatgt
ttcggtcgaccgagaattacagctcaagaggacaaacaatggtttcaattggatatggag
gaagctttctatttgtgtttttcactcaaatgcctcaaagtcatcagtgaaaacggatac
ataaagagtaatgaagagctatgggactacttaaaatccaaaaagccagtgtttcctgtt
tcttacaaggtgtattctcatcttcggcataaaaattgggttgtaagatcaggattgcag
tatggtgtggactttgttgcctactgtcaccatccggctcttgttcattccgagtacgcg
gtgttggtactatcagaaggagataatgatctaaatggtcgattgagagtgtggtcagat
gttcattgtacggttcgtctttgtggaagtgttgcaaaaacgttattgactgttatcgtg
aatagtaataaccaaggtgcaaactctccttcatgtttagagcactacactgttgaagaa
cagacaatcacgagatggaacccggaacgaagccgagaagatcaaaccggtcctaagaat
ggaacaaagaagattgtaaaggattggtgcaatcatatttga
DBGET
integrated database retrieval system
