Gossypium hirsutum (upland cotton): 107945544
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Entry
107945544 CDS
T04793
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107945544
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107945544
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107945544
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107945544
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
WEF-hand
Pox_J1
Motif
Other DBs
NCBI-GeneID:
107945544
NCBI-ProteinID:
XP_016735087
UniProt:
A0A1U8N7J4
LinkDB
All DBs
Position
D12:complement(37867152..37883982)
Genome browser
AA seq
2413 aa
AA seq
DB search
MLELSSTLSSHVRFLLQSLTEANADSVFRELCQFIEYGIEGSTLVLQTCLDCLSSHKTDS
KNLQSEQVVASIFRHAMDKPNFCTVFCQSLRSMDISENFLENFSXTLQLSLSEKIAVGLA
LSDSENPETRMCGKNFCMAQIEELQSNPACPDSSMQIQNMVMFLQCSSAFSKHVDSFMQM
LSLVQAKDVAQFVLTPILSDELREANFLRNIDFFDESEENDFDALLAEMEKEMSMGDIIK
ELGYGCTTDAAHCKEILSLYLPLTEVTISRILGAITRTYVGLEDNQIAFSTFSLALGCGN
SLDLPPLSSWNVDVLIKTIKQLAPNTNWVQVIEHLDHEGFYIPNETAFTFFMSVYQHSCQ
EPFPLHAVCGSVWKNIEGQLSFLKYAVEAPPEVFTFAHSVRQLDYAEAVHGHKLQIGNGN
HAWLCLDLLDVLCQLAERGHASFVRSMLDYSLKHCPEILLIGMAHVNTAYNLLQHDVTSS
VFLMIIKNAVGAGTILQLWHVNPKVVLRGFVEVQNTEPDSMIRILDICQELNILSSVLEM
MPFPSAIRLAVLASRKEVIDFEKWLSSNLNMYKDVFFEECLKFLKEIQFGGSQEFSAKPF
HHTTAVLNLYLEASTTFFKILKANSGSITSTQLLEEMERLHVTIMDSTSKLQNGGTTVSS
XSDGYGDEIEAEANSYFHQMFSGQLTIDAMVEMLARFKESSVKREQSIFECMIANLFEEY
RFFHKYPERQLKIAAVLFGSVIKQQLVTHLTLGIALRGVLDALRKPADSKMFLFGTKALE
QFVDRLIEWPQYCNHILQISHMRATHSELVAFIERALARISSGHLESTGSNNLSVHHQVS
SQVTPGNGELNSSSIIQSGPQLSSPLRLPRHDSSLDDRNKASAASSNDVKPLLPSVGQPS
VASLSDASSIQKPQNAVTSASMLSASPGFVRPSRGVTSTRFGSALNIETLVAAAERRETP
IEAPTSDIQDKISFIINNISVANIEAKGKEFTEILKEQYYPWFAQYMVMKRASIEPNFHD
LYLKFLDKVNSKALNKEIIQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRN
QVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMGILALLAEI
YSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKRELEGNPDFSNKDVGASQPQMV
PEAKTGIISPLNHVDIPLEVASPPNPGGHTHLLSQYAGPLRLSSGALVEDEKLAALGLSD
QLPSAQGLFQASPSQSPFSVSQLSTPIPNIGTHVIINQKLSALGLHLHFQRVVPIAMDRA
IKEIVAGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEP
LRGSISSQLRSSLQGLNVGSDLLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAN
QLALRRKHRDPAFFDPSMYGQGSMGVVPEALRPKPGHLTVSQQRVYEDFVRLPWQNQSGQ
TTHTMSAGPSTSPGDTGLTGTFGSTSGQVTPGYTSGPGNLGQADVASEAIETTSASLLSI
PSIHIGSGTGLTQQTTENDPLNASFPSTTAAPELLSVETTDAVKEFGPTSQSLPSPAATE
RLGSSISETSLSTRDALDKYQIVAQKLENLVTSDGREADIQGVISEVPEIILRCVSRDEA
ALAVAQKVFKGLYENASNSLHVSAHLAILAAVRDVCKLAVKELTSWVIYSEDERKFNKDI
TVGLIRSELLNLAEYNVHMAKYIDGGRNKAAMEFAVSLLQTLVSDESRVISELHNLVDAL
AKVASKPGAPESLQQLIEMIRNPSASMAALSSATVAKEDKAKQSRDKKGPSHAPANREDN
SSMEALEPDPAGFKEQVSMLFAEWYQICELPGANDGPCNHYILQLYQNGLLKGDDMTERF
FRIITELSVAHCLSSEVMSSGALQSAQQAQTLSFLAIDIYAKLVLAILKYCPVEQGSSKL
FLMSKILTVTLRFIQKDAEDKKASFNPRPYFRLFINWLLDLGSLDPVTDGANFQILTAFA
NAFHALQPLKVPSFCFAWLELVSHRTFMPKLLTGNSQKGWPYIQRLLVDLLQFLEPFLRN
AELGVPVHFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMR
LPDPSTPNLKIDLLPEIRESPRILSEVDAALKAKQMKADVDEYLKTRPQGGCSFLTELKQ
RLLLSPSEAASAGTRYNVPLINSLVLYVGMQAIQQLQSRVPHAQATANTVPMSVFLVSAA
LDIFQSLIGDLDTEGRYLFLNAIANQLRYPNSHTHYFSFILLYSFAEANQEIIQEQITRV
LLERLIVNKPHPWGLLITFIELIKNPRYNFWNRSFIRCAPEIEKLFESVARSCGGLKPVD
EGMVSGWVSETAH
NT seq
7242 nt
NT seq
+upstream
nt +downstream
nt
atgctcgagctttcctccacactctcaagccacgttcggttcttgctgcagtccttgacc
gaagccaacgctgactctgtttttcgagaactctgccagttcattgaatatggaattgaa
ggaagcactctggtgctgcaaacctgtttggattgcttgagttctcacaaaacagattca
aagaatttgcaatctgaacaagttgtagcctcaatttttagacatgctatggacaagcca
aacttttgtactgtcttctgtcagtccctaagaagtatggatatcagcgagaatttcctg
gagaatttctcanaaacactgcagttatctctgtctgaaaaaattgctgttggtcttgct
ttatctgattctgaaaatccagagacaagaatgtgtgggaagaatttctgtatggctcag
attgaggaattgcagtctaatcctgcctgtcctgattcttccatgcaaattcagaatatg
gttatgttcctccagtgctccagcgctttttccaagcatgtagattcctttatgcagatg
ttatctctagttcaagccaaagatgttgcgcagtttgttttaactccaatactttcagat
gaattgcgcgaggctaatttcttaaggaatatagatttcttcgatgaatctgaggaaaat
gattttgatgctcttttagcagaaatggagaaggaaatgagcatgggggatatcattaag
gaactaggttatggatgcaccactgatgctgcacattgcaaagagattttatctctttat
ttacctctgactgaggtgactatatctaggatacttggtgcaattacccgtacctatgtt
ggtctagaggacaaccaaattgcattttcaacatttagcctggcccttggttgcgggaat
tcattggatttgcctccattgagctcatggaacgttgatgttcttataaaaactataaag
caactcgcacccaataccaactgggttcaagttattgaacacctggatcacgaggggttc
tacattcctaatgagacagcattcacttttttcatgtctgtgtatcaacattcgtgccag
gaacccttccctctccatgctgtctgtgggtccgtgtggaagaatattgaaggtcagcta
tcttttctaaaatatgctgtagaagcaccgccagaagtatttacctttgcccattcagtg
aggcagctggactacgcggaggcagtgcatggacataagcttcagattggaaatggaaat
catgcctggttgtgtctggacctcttagatgtgctgtgtcaactagctgaaagaggtcac
gccagttttgttcgatcaatgctcgattattccttaaaacactgccctgaaatcctgctt
attgggatggctcatgttaatacggcgtataatctcctgcagcatgatgtgacttcttca
gtttttctaatgataattaaaaatgctgtgggtgctggtacaatacttcaactttggcat
gtgaacccaaaagttgtcttacgtggatttgtagaagtacagaatactgagcctgacagc
atgattagaattttggatatctgtcaagaattaaatattctatcatcagtgttggagatg
atgccttttccttctgccatcagattagcagtccttgcttccaggaaggaggttatagat
tttgagaagtggttgagtagtaatctgaatatgtataaagatgttttctttgaggagtgc
ctaaagttcttgaaggagatacaatttggtggatcacaagagttttctgccaaacccttc
catcatactactgctgttttaaatctttatttggaagctagtaccacttttttcaagatc
cttaaagctaatagtggctccataacctctactcagcttcttgaggaaatggaaaggttg
catgtgacaattatggattctacttcaaagctgcaaaatggtgggacaacagtttcttcc
ncctctgatggatatggagatgaaattgaggcagaagcaaattcttacttccatcaaatg
ttttctggtcagttgaccattgatgcaatggttgaaatgcttgcacggttcaaggaatct
tctgtgaaaagggagcaatcgatatttgagtgcatgattgcgaatttgtttgaagaatac
cgattttttcacaagtatcctgaaagacagctcaagatcgccgcagttctctttggctct
gttatcaagcagcaacttgtaactcatctcacccttggaattgccttgcgtggtgttcta
gatgcattgcgtaaacctgcagattcaaaaatgtttttgtttggaactaaagccttggag
cagttcgtggatcgtctgattgagtggccgcagtattgcaaccatattttacagatttct
cacatgcgtgccactcactcggagcttgttgcttttattgaacgagctcttgcaaggatt
tcatcagggcatttggagtcaactgggagcaacaacctttctgttcatcaccaagtttcc
tctcaggtgaccccaggaaacggggagttgaatagctctagcatcattcaatctgggcca
caactttcatctccgctgcggcttccaagacatgatagttctcttgatgaccgtaacaaa
gcctctgctgcatcatcgaatgatgtgaaaccacttctaccttctgtagggcagccttca
gttgcttccctaagtgatgcttctagcattcagaaaccgcaaaatgcagtaactagtgca
tctatgctgtctgcatcccccggttttgttcgtccttctcgtggagtcacttctactaga
tttggctctgctctgaacattgaaacgctagttgctgctgctgagagaagagagacaccc
atagaggctccgacatctgatatccaggacaagatatcattcataatcaataatatttca
gttgcaaatattgaagccaaagggaaagagttcactgaaatattgaaggagcagtattat
ccctggtttgcccagtacatggttatgaaaagagctagcattgaaccaaattttcatgat
ttgtatttgaagttccttgacaaagttaactcaaaggctttgaataaggagattatccaa
gctacatatgagaactgcaaggtcttgttgggatctgagcttataaaatcaagctctgaa
gagcggtcattgctaaaaaatttgggtagttggcttggaaagttaacaattggccggaat
caagttttgagagctcgtgaaatagatcccaaatctctgattatagaggcatatgagaag
ggattgatgattgcagttatcccatttacttcaaagattcttgagccatgccaaagtagt
ctggcatatcaacctcctaatccatggaccatgggcattttggcattactagctgagatt
tattcaatgccaaacttgaaaatgaatctcaagtttgacatagaggttctattcaagaac
cttggtgtggatatgaaggacataacaccgacttctctcctcaaggatcgtaaaagagaa
cttgaagggaatcctgatttttctaataaagatgttggagcatctcaaccccagatggtt
ccagaagctaaaacaggaataatttctccacttaatcatgttgacatacctctcgaggtt
gccagtccacctaatcctggtggccacacacatttgttatctcagtatgctggtcccttg
cgtctttcttctggtgcgttggtggaggatgaaaaactagcagctttaggcttgtctgat
cagcttccttctgcgcaagggctatttcaagcctctccttcacagtcgcctttttctgtt
agtcagctttcgacgccaataccaaacatcggaactcatgttattatcaatcagaaacta
agtgctctaggcttgcacttgcattttcagagggtggttccaattgcaatggacagagct
attaaagagattgtagctggtattgttcagcgcagtgtttccatagcaactcaaacaaca
aaggagcttgttttaaaggattatgctatggaatcagatgagacacggatttataatgca
gcacacctgatggtagcaagtttggctggaagtctggcacatgtaacatgcaaggaacct
ctacgtggctctatatcaagtcagctgagaagttcacttcaggggttgaatgttgggagt
gatcttcttgaacaagctgttcagcttgttacaaatgataaccttgatcttggctgtgcg
gtcattgaacaagctgctactgataaggcaatacaaaccattgatggagaaatagctaat
caacttgctttaagaagaaagcatagggatcctgcattttttgatccaagcatgtatgga
caaggttctatgggtgtggtgcctgaggctcttcgacctaaaccaggtcacttgactgtg
tctcagcagcgagtttatgaggactttgttcggcttccttggcaaaaccaatctggccag
acaacgcatactatgtctgccggtccttcaacttcacctggtgatactggcctaacgggc
acatttggttctacatctgggcaagttacccctggttacacatctggcccaggaaacttg
ggacaagcagatgttgcttctgaggcgattgaaactacatcagcatccctattgagtatt
ccctcgattcatattggctcaggaactggtcttacacagcagactaccgaaaatgatccc
ctgaatgcttcattcccttcaacaactgcagctcccgagttactttcagttgaaacaact
gatgctgtaaaagaatttggacctacatcacagtcgttaccttcacctgctgctactgag
cgtctaggaagtagcatctcagagacttcattgagcacaagggatgcattggataaatat
cagattgttgctcagaagttggaaaatttggtgacaagtgatggtagagaagctgacatt
cagggagtgatctctgaggtacctgaaatcatactcagatgtgttagtcgggacgaggct
gcactggctgtggctcaaaaggttttcaaaggcttatatgagaatgcatcaaacagtctt
catgtcagtgctcaccttgctattctggctgctgtgcgagatgtttgcaagctcgctgtt
aaggagcttactagttgggtgatatattcagaagatgagcggaagttcaacaaagatatc
actgttggccttattcgaagtgaattgctgaaccttgcagagtacaatgttcatatggca
aaatatattgacgggggaaggaataaagctgcaatggaatttgcggtgtcccttcttcaa
actttggtctctgatgaatccagagtcatctcagaactccataatcttgttgatgctctg
gcaaaggttgcttcaaaacctggagctcctgaatcattgcaacagttgattgagatgatc
agaaatccatctgctagtatggctgcattatccagtgccactgttgcaaaggaggataag
gccaaacaatctagagacaaaaagggacccagccacgcaccagctaacagggaagataac
agtagtatggaggctctagaaccagatcctgcaggcttcaaggagcaggtctccatgttg
tttgcagaatggtatcagatttgtgagcttcctggtgcaaatgatggaccttgtaatcat
tacatcctacaattgtatcaaaatggactgctcaaaggggatgatatgacagaacgcttt
ttccgtattatcacggaactttctgttgcacattgcctatcttctgaggtaatgagttct
ggggcattgcaatcagctcaacaggcgcagactctttctttccttgccattgatatttat
gcaaaacttgtgctagcaatcctcaagtattgcccagtggaacagggatcaagtaaactc
tttcttatgtccaagattttgaccgtgactctgaggtttatacaaaaagatgccgaggat
aagaaagcatcttttaatccgagaccatatttcagattatttatcaactggctgttagat
cttggttccttggaccctgtcactgatggtgctaattttcagattttgacggcctttgcc
aacgcatttcatgctctccagccccttaaagttccttccttctgctttgcatggctagag
cttgtcagtcataggactttcatgccgaaattgctcactgggaattctcagaagggttgg
ccctatatccaacgtttgctggtggacttgcttcagttcctggagccgtttttgaggaat
gcggagcttggagttccggttcattttctgtataaaggcacactaagggtgctgctggtt
ctgcttcatgacttcccggagttcctgtgtgattatcattttaccttttgtgatgtgatt
cccccgagctgcatacaaatgcgaaatatcatccttagtgcttttccacgcaacatgagg
ctaccagatccatctactcccaacttaaagattgatttgcttccagaaatcagagaatca
cctcgcatcttatccgaggttgatgctgctcttaaagcaaaacagatgaaggctgatgtg
gatgagtatctcaagacaaggccacaaggaggatgctcatttctaactgaattgaaacaa
agactgctcctttcaccaagtgaggcagcatctgctggcacccgttataatgtaccgtta
atcaactctctggtgctttacgttggaatgcaggccatccaacaactgcagtcaagggta
cctcatgcacaggcaacagcaaacactgttccgatgtctgtgttcttggttagtgctgcc
ttggatatcttccagagtctaataggggaccttgatacggaggggcgttatcttttcctt
aatgcaattgctaatcaattgcgatatccaaacagtcatacacattacttctccttcatc
ttgctatactcgtttgctgaagcaaatcaggaaattatccaagagcaaattacaagagtt
ctgttggaacggctaattgttaataaaccacatccatggggtctcctcattaccttcatt
gagctcataaagaatccaagatacaatttttggaatcgatcattcataaggtgtgcacct
gagattgagaaactgtttgaatcggttgcaagatcatgtggaggtctcaaacctgtggat
gagggtatggtttctggttgggtatctgaaactgcacattaa
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integrated database retrieval system
