Gossypium hirsutum (upland cotton): 107946085
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Entry
107946085 CDS
T04793
Name
(RefSeq) sm-like protein LSM4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107946085
09123 Folding, sorting and degradation
03018 RNA degradation
107946085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107946085
03041 Spliceosome [BR:
ghi03041
]
107946085
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107946085
mRNA degradation factors
5'-3' decay
Lsm complex
107946085
Spliceosome [BR:
ghi03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
107946085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
107946085
NCBI-ProteinID:
XP_016735761
UniProt:
A0A1U8NCT6
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Position
D12:complement(44599222..44601840)
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AA seq
148 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRADRKPPVLGRGRGRGREDGPGGRQPKGAGRGFED
GAKGAGGRGRGGSGGKTSGSRGGGRGRG
NT seq
447 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctctttctctactaaaaactgcacagggccatcctatgctggtggaactgaaa
aatggggagacttataatggacatttagtcaattgcgacacttggatgaacattcatctt
cgtgaagttatctgcacttctaaggatggagacaggttttggcgaatgcccgaatgctat
atccgtggaaatacaattaagtatcttcgagttcctgatgaggtaattgataaagttcag
gaagaaacaaagagtcgtgcagataggaagcctcctgttttaggtcgtggcagaggtaga
ggtagagaagatggtcctggtggaaggcaaccaaaaggagctgggcgtggatttgaagat
ggtgctaagggtgcaggaggacgaggcaggggtggctcaggtggaaagaccagtggaagc
agaggtggtggccgaggtcgaggttga
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