Gossypium hirsutum (upland cotton): 107947377
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Entry
107947377 CDS
T04793
Name
(RefSeq) eukaryotic initiation factor 4A-3
KO
K13025
ATP-dependent RNA helicase [EC:
3.6.4.13
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03013
Nucleocytoplasmic transport
ghi03015
mRNA surveillance pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107947377
09122 Translation
03013 Nucleocytoplasmic transport
107947377
03015 mRNA surveillance pathway
107947377
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107947377
03041 Spliceosome [BR:
ghi03041
]
107947377
03009 Ribosome biogenesis [BR:
ghi03009
]
107947377
03012 Translation factors [BR:
ghi03012
]
107947377
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
107947377
mRNA cycle factors
Stress granule specific factors
107947377
Spliceosome [BR:
ghi03041
]
Complex C
Other components
EJC/TREX
107947377
Ribosome biogenesis [BR:
ghi03009
]
Eukaryotic type
90S particles
Helicases
107947377
Translation factors [BR:
ghi03012
]
Eukaryotic type
Initiation factors
eIF-4
107947377
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_19
ResIII
AAA_30
Helicase_RecD
AAA_22
Motif
Other DBs
NCBI-GeneID:
107947377
NCBI-ProteinID:
XP_016737525
UniProt:
A0A1U8NES7
LinkDB
All DBs
Position
A13:13288313..13291762
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AA seq
407 aa
AA seq
DB search
MSAAAAATSRATRRMGAEDEKLVFETTEGIEPILSFDQMGLKDDLLRGIYNYGFEKPSAI
QQRAVMPIINGRDVIAQAQSGTGKTSMIALTVCQVVDTASREVQALILSPTRELASQTEK
VIRTIGDFMNIQAHACIGGKSVGEDIRKLENGVHVVSGTPGRVCDMIKRRTLRTRAIKLL
ILDESDEMLSRGFKDQIYDVYRHLPPELQVCLISATLPHEILEMTSKFMTDPIRILVKRD
ELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRSNNFTV
SSMHGDMPQKERDAIMAEFRDGATRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHR
IGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcggcggcggcggcgacaagccgagcgactcgacggatgggagccgaggatgag
aagctagtgttcgaaacgacggaaggaatcgagccgatattgagttttgatcagatggga
ctaaaagacgatctcctccgtggaatctacaattacggcttcgaaaagccatctgctatc
cagcagagagccgtcatgccgataatcaatggccgcgacgtcattgcccaagctcagtct
ggtaccggtaaaacttccatgattgccctcaccgtttgccaagtggttgacacagctagc
agagaggttcaagcattgatactgtcacccacgagggaactggcttcacaaacggagaaa
gtgatacggacaattggtgatttcatgaacatacaagcgcacgcatgtattggaggcaaa
agtgtgggtgaagatataagaaagctagaaaatggagttcatgtagtgtcgggaactcct
ggtagagtttgtgatatgatcaaacgaagaaccctacgtacaagggctattaaactattg
attcttgatgaatctgatgagatgttgagccgagggttcaaagatcaaatttatgatgtt
taccgacatcttccaccagaacttcaggtttgtttgatatctgctaccctccctcatgaa
atattggaaatgacgagcaaatttatgactgatcctataaggatccttgtgaagcgtgat
gaattgactctggagggaattaagcagttttttgtagcagttgaaagggaagagtggaag
tttgatacactatgtgatctttacgacacgttgacaatcactcaagctgttattttctgc
aatacaaaacgaaaggtcgattggctaactgagaagatgcgtagcaataactttacggta
tcctcaatgcatggagatatgcctcagaaggaaagagatgcgattatggctgagtttcgg
gatggtgcaacccgtgttcttatcactacagatgtttgggccaggggacttgatgttcag
caggtgtctctggtgatcaattacgacctgccaaacaatcgagagctttacatccatagg
attggacgttctggtcgattcggacgaaagggtgttgctattaatttcgtgaaaagcgac
gacatcaagattcttagagacatagagcagtactacagtacccagattgacgaaatgccg
atgaatgtcgcagatctgatatga
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