Gossypium hirsutum (upland cotton): 107947920
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Entry
107947920 CDS
T04793
Name
(RefSeq) double-strand break repair protein MRE11-like isoform X1
KO
K10865
double-strand break repair protein MRE11
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03440
Homologous recombination
ghi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107947920
03450 Non-homologous end-joining
107947920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ghi03032
]
107947920
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107947920
DNA replication proteins [BR:
ghi03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
107947920
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
107947920
BRCA1-C complex
107947920
NHEJ (non-homologous end-joining)
MRX complex
107947920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mre11_DNA_bind
Metallophos
ASTN1_2_fn3
Motif
Other DBs
NCBI-GeneID:
107947920
NCBI-ProteinID:
XP_040966719
LinkDB
All DBs
Position
A04:4936800..4943864
Genome browser
AA seq
721 aa
AA seq
DB search
MAGSRSEYSSNTLRILVATDCHLGYMEKDEIRRHDSFQSFDEICSIAEEKRVDFLLLGGD
LFHENKPSRSTLVKAIEILRRHCLNDQPVQFQVVSDQTVNFQNAFGHVNYEDPHFNVGLP
VFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMILGGSGVGQITLYPILIRKGSTTLA
LYGLGNIRDERLNRMFQTPHAVQWMRPEPQEGCEVSDWFNILVLHQNRVKMNAKNAINER
FLPRFLDFIVWGHEHECLIDPQEVPGMGFHITQPGSSVATSLIDGESKPKHVLLLEIKGN
QYRPNKIPLTSVRPFEYTEVVLKDEPDIDPNDQNSILEHLDKVVSGLIEKSNRKAVNGSE
RKLPLVRVKVDYSGFMTINPQRFGQKYVGKVANPQDILIFSKSSKRSQKEAKIDDSERLR
PEELNQQNIEALVAENNLKMEILPVNDLDVALHNFVNKDDKMAFYNCLHYNLEETRKKIG
KDSDVSKFEEEDLILKVGECLEERVKERSSHPTDTPQFTSSMQSIENIRSKNVTGIGSAA
SFSDDEDTAQILSSANKGRKGSSAASRSSRDASELGKSSTRGRGRGRGRGSSGLKQTTLD
ATLGFRRSQRSTSVKVQSIADDEENVDSASSEEHEINEVESSSENKNDEITKGRGRKRAA
PRGRGRGTTSKRGKKSDNSSVHSVFMNKLDDDDDDDDAEEIARRFNKPQPRVTKSYGALR
R
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggccggctcaagaagtgagtatagtagcaacacacttcgaatactagtagcgacggat
tgtcatttaggttatatggagaaagatgaaatacgacgacatgattcatttcaatcgttt
gatgaaatatgttcaattgcagaggaaaaacgggtggactttttacttcttggaggagat
cttttccatgaaaataagccttcgaggtcaactttggttaaggccattgagattcttcgt
cggcattgccttaatgatcaacctgtgcaatttcaagttgttagtgaccagactgtgaat
tttcagaatgcatttgggcatgtgaattatgaggatcctcacttcaatgttggcttgccc
gtgtttagcattcatggaaaccatgatgaccccgctggagtggacaacctttctgcagtt
gatattctttctgcatgtaaccttgtcaactatttcgggaaaatgattcttggtggttca
ggcgttggtcagattacactctaccctattcttatcaggaagggctcaactactctagct
ctttatggtcttgggaatattagagatgaacggctcaacagaatgtttcagaccccccat
gccgtgcaatggatgcgacctgaacctcaagaagggtgtgaagtgtctgattggttcaac
attctggtgcttcatcagaacagagtgaagatgaatgctaaaaatgcgataaatgagcgc
ttcttaccacgcttccttgatttcatagtgtggggacatgaacatgaatgtcttattgac
cctcaggaagtaccagggatgggatttcacattactcaaccaggttcctccgttgcaacg
tcactgattgatggagaatcaaaaccaaaacatgtgctccttttagaaattaagggaaat
caatatcgtccaaacaaaatacctttgacatcagtgaggcctttcgaatataccgaggtt
gtgctgaaggacgaacctgacattgatcccaatgatcaaaactcaattcttgaacatttg
gacaaagtggtgagcggtctgatagagaaatctaataggaaagctgtcaatggatcagag
cggaagctcccattagtccgagttaaggtggattactctggattcatgacaataaatcct
caaagattcgggcagaagtatgttgggaaggttgcaaatccccaagatattctcatattc
tccaagtcttctaaaaggagtcagaaagaagccaaaattgatgattctgaaaggcttcgt
ccagaagaactaaatcaacagaatatagaagcattagttgctgaaaacaatctgaaaatg
gagattcttccagtcaatgacttggatgttgcgctgcacaattttgttaataaggatgac
aaaatggctttctataactgtctgcattataatcttgaagaaactcgtaaaaaaattgga
aaggactcagatgtttcaaagttcgaagaggaagacttaattcttaaagttggagagtgc
ttggaggaacgtgtcaaagaaaggtcttcacaccctacagatacccctcagttcacatcc
agtatgcagtcgattgagaacatccggagcaaaaatgttacaggaataggaagtgcagcc
tcctttagtgatgatgaagacacagcgcaaatattaagctccgccaataaaggccggaaa
ggttcttcagcagcttctcgatcatcacgtgatgcttctgaacttggtaaaagttccact
agaggaaggggtagaggtaggggcagaggctctagtggcttaaagcagacaactcttgat
gctactttggggtttcgccgttctcaaagatctacctcggttaaggttcaaagtattgct
gatgatgaggagaacgttgactctgcttcaagtgaagaacatgaaattaatgaggttgaa
agcagttcggaaaacaaaaatgatgaaattactaaaggtaggggacgcaaaagagctgca
ccaaggggaagaggtagaggcactacatctaagcggggaaagaaatctgataactcttca
gttcatagtgtgttcatgaacaagcttgatgatgatgacgacgacgacgatgctgaagag
attgctcggagatttaataaacctcaacctcgggtaacaaaaagttatggtgctttgaga
aggtaa
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