Gossypium hirsutum (upland cotton): 107962012
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Entry
107962012 CDS
T04793
Name
(RefSeq) putative pectate lyase 2
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107962012
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
107962012
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
107962012
NCBI-ProteinID:
XP_040971907
UniProt:
A0ABM3BXX6
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Position
A06:complement(117479926..117481462)
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AA seq
393 aa
AA seq
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MASLTLISLPLLLLLFLSFAYSSPLPNNASASLLYNVSTISTVKLMNVIDSCWRTINWAT
NREALADCSVGFGKASIGGKYGPIYLVTTPYDDPVNPTPGTLRFGVIQSSPLWIIFATDM
VITLKNELIVNSFKTIDGRGANVEIAYGPCITIHGVTDVIIHGISIHDCKPGVAGLVRSS
PTYVGKRGGSDGDAVSIFSSSNIWIDHCYLARSADGLIDVIHASTDVTISNNYFAQHDKV
MLLGHSDDFAADEVMKVTLVFNRFGEGLIERMPRVRIGYAHVANNRYDEWKMYAIGGSAN
PTIFSEGNYFIAPDDPGSKEVTKRETNNWETWRWQSSKDVFINGAYFVPSGHGSSDPLYT
MTQSFIVAPGYMVPDLTGDAGPLHCLLDRPCML
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atggcttcccttacccttatctctctccctttgcttttactccttttcttaagctttgct
tattcatcaccactacccaacaacgcctcggcatcgctactgtacaatgtctccactatt
tccactgtgaagcttatgaatgtgatcgactcttgctggcgaaccattaactgggctacc
aatcgagaagcattggctgattgttcggttggcttcgggaaagcatcgataggtgggaaa
tatggaccgatatatctagttaccaccccttacgatgaccccgtcaaccctacacctggc
acgcttcgtttcggtgtcattcaatcgagtccactttggatcattttcgctactgatatg
gttatcacgctcaaaaatgaacttatagtcaatagtttcaagaccattgatggaagagga
gctaacgtggagattgcatatggaccctgcataaccattcacggcgttactgatgttatc
atacatgggattagcatacatgactgcaagcccggggtggctggtttagttcggagctcc
ccgacatatgtagggaaacgcgggggcagtgacggagatgctgttagcattttttcttct
tccaacatttggatcgatcattgctatcttgctcgttccgcggatggtcttatcgatgtc
attcatgcttcgacggatgtcacgatctctaataactatttcgctcaacatgataaagtt
atgctgttaggccacagcgacgacttcgctgctgatgaagttatgaaagttacgttagtt
ttcaaccggtttggagagggacttatagagaggatgccaagggtccggataggctacgct
catgttgccaacaaccgatatgatgaatggaagatgtatgccattggcggcagcgctaat
ccaaccattttcagcgaaggaaactacttcatagctcccgatgatccagggtccaaagag
gttaccaagagagaaacaaataattgggaaacttggagatggcagagttcaaaagatgtg
tttataaatggtgcttatttcgttccatcgggccatggaagttccgatcctctttacacc
atgactcaatccttcattgttgctccaggatacatggtccctgatttaacaggcgatgct
ggtcctttacattgtcttcttgacagaccatgcatgctataa
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