Gossypium hirsutum (upland cotton): 121221099
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Entry
121221099 CDS
T04793
Name
(RefSeq) probable ubiquitin conjugation factor E4
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04120
Ubiquitin mediated proteolysis
ghi04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
121221099
04120 Ubiquitin mediated proteolysis
121221099
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ghi04121
]
121221099
Enzymes [BR:
ghi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121221099
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
U-box type E3
121221099
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Motif
Other DBs
NCBI-GeneID:
121221099
NCBI-ProteinID:
XP_040957510
LinkDB
All DBs
Position
D09:complement(2811384..2818107)
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AA seq
1053 aa
AA seq
DB search
MATQKPQRAPEEIEDMILRKIFLVTLKENPENPSSSSSDPRVVYLEMTAAEILSEGKSLL
LSRDLMERVLIDRLSGEFPNSEPPFNYLIGCYKRAHEEIKKISNMKDKTLRSGMESAAKQ
AKKLAVSYARIHLGNPDLFSNGNLKDSNPKAGSSLSSSSPLFPLVFAEVSSGVMLDGFGG
NDFGSRVDCPPGFLEDFFKDSDFDTLDPILKGLYEDLRGSVLKVSALGNFQQPLRALLYL
VKFPVGAKSLVNHPWWIPKGVYLNGRVIEMTSILGPFFHVSALPDHTIFKSQPDVGQQCF
SDASTRRAADLLSSFTTIKTLMNTLYDGLAEVLLCLLKNTETRDSVLEYLAEVINKNASR
AHIQVDPISCASSGMFVNLSAVMLRLSEPFLDANLTKRDKIDPTYVFYCSRLDLRGLTAL
HATSEEVAEWIDKDNPVKTDGSGLNNDGENSLRQLQEASSSGSTPNVKPTRSSSEKAKYP
FICECFFMTARVLNLGLLKAFSDFKHLVQDISRSEDTLATLKAMQGQAPSPQLELDISRL
EKEIELYSQEKFCYEAQILRDGALIQQALSFYRLMVVWLVGLVGGFKMPLPPTCPMEFAS
MPEHFVEDAMELLIFASRIPKALDGVHSYVLDDFMKFIIMFMASPQFIKNPYLRAKMVEV
LNCWMPRRSGSSATSTLFEVHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAE
LLEYLWQVPSHCNAWKQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMS
NTAEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVER
VANMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKELLKQIVRIYVHLARGDAKNIFPSAIS
SDGRSYNEQLFSAAADVLRRIGEDGRIIQDFIELGAKAKAAASEAMDTEAALGDIPDEFL
DPIQYTLMKDPVILPSSRITIDRPVIQRHLLSDSTDPFNRSHLTSEMLIPNTELKARIEE
FIRSQELKKHGEGLNMQSSKGTIQPTSGEMLID
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atggctacgcaaaaaccccaaagagccccagaagaaatagaagatatgatcctaaggaag
atcttccttgtaacccttaaagagaacccagagaacccatcatcatcttcttctgatcca
agggttgtttacctagagatgaccgcagctgagatcttaagtgaaggcaaaagtctttta
ctttcacgtgatctaatggaaagggttttaattgatcgtctgtctggtgaattccctaat
tcagaacccccttttaattatctcattggttgttataagcgagctcatgaagaaatcaag
aagatttccaacatgaaagacaagacgctgcgttctgggatggaatctgctgctaaacag
gctaagaagttggctgtttcatatgctaggattcatctgggaaatcctgatttgttttct
aatgggaatttaaaagatagtaaccccaaagccggttcttctttgtcttccagttcccct
ttgtttcccttagtttttgctgaagtttcaagtggagtaatgcttgatgggtttggaggg
aatgattttggaagtcgggtggattgtccacctgggtttttggaagacttctttaaggat
tcagattttgatactttggaccctatcttaaaaggtttgtatgaggatttaagagggagt
gttttgaaagtttcagctttgggaaattttcagcaacctttgagggctttgttgtatttg
gttaagttccctgttggtgctaaaagcttggttaatcatccatggtggattcctaaagga
gtttacttgaatggacgtgtcatcgaaatgactagcattttgggcccctttttccatgtt
agtgctctgcctgatcataccattttcaagagccagcctgatgttggccagcagtgcttc
tcagatgcatcaactagacgagcagctgacttgttatcttcattcaccacaataaagact
ctcatgaatactttatatgatggtctggctgaagttcttctttgtctccttaaaaacact
gagactcgtgacagtgtcctcgagtatcttgcagaagtcatcaataaaaatgcatcaagg
gcccatatacaggtggatcctatatcttgtgcaagttctggcatgtttgtcaatctcagt
gctgttatgctccgactttcagagccatttttggatgcaaatttaacaaaaagagataaa
atcgatccaacctatgtcttctactgtagccgtttggatttgagggggttaactgctctg
cacgcaacatcagaagaagtggctgaatggatcgataaagataatcctgtgaaaactgac
gggagtggactaaataatgatggtgaaaatagtttgcggcaattgcaagaagcatctagt
tcgggaagtaccccaaatgtgaagccaacccgaagtagtagtgaaaaagctaaatatcct
ttcatttgtgaatgcttctttatgactgctagggtactcaacttgggcctcctaaaggca
ttttcggactttaagcatctagtccaggacatttcaagaagtgaagacacacttgccacc
ttaaaagccatgcaaggacaggcaccttctccacaactggagcttgatatatcgaggctt
gagaaggaaattgaattgtattcacaggaaaaattctgttacgaggctcaaattttgagg
gatggggcacttattcaacaagcactttcgttctatcgactaatggtggtttggttagtt
ggcttggttggtggatttaaaatgcctctgccacctacatgtccgatggaatttgcttcg
atgccagagcactttgtggaagatgctatggaactattaatatttgcttctcggattccg
aaagctcttgatggagttcattcatatgtactggatgattttatgaaatttattattatg
tttatggcaagtccgcaatttatcaagaacccctatctcagagcaaaaatggttgaagtt
ttgaactgttggatgccgcgtagaagtggttcatctgcgacatcgacactatttgaagtg
catcaactgtctttggaatatctcgtgcggaatcttttgaagctatatgttgacattgaa
ttcacaggttctcacacacagttctatgataagttcaacatccgccataatattgctgaa
cttcttgaatatctttggcaagttcctagtcactgtaatgcttggaaacagattgcgaag
gaagaagaaaagggtgtttatctgaatttcttgaatttcctgattaacgatagcatctac
ctcctcgatgaaagtcttaacaaaattcttgaactcaaagagcttgaggctgagatgtca
aatactgcagaatgggaacgcaggcccgctcaggagaggcaagagagaactcgactgttc
cactcccaggagaatattatacggattgacatgaagttggcaaatgaggatgttagtatg
ctggcttttacatctgagcagattacagctccttttctactccctgagatggttgagaga
gtggcgaatatgttaaattactttttattgcaattagttggccctcaaagaaagtcactc
actctgaaagatcccgaaaagtatgaattccgtccgaaagagttgctcaagcagattgtc
cgcatttacgttcatctggcaaggggtgatgccaaaaacatatttccatctgccatctcc
agtgatggtcgatcctataatgaacagttgtttagtgctgcagctgatgttcttcgaaga
attggtgaggatgggaggataatacaagattttatcgagcttggtgcaaaggccaaggct
gcggcttcagaggccatggacactgaagctgcccttggagatattcccgacgaattcctc
gatccaattcaatatacattgatgaaggatccggtgatcttaccatcttcaagaatcaca
atagacagacctgttatccaaagacatcttctaagtgatagtactgatccattcaaccga
tctcatcttacctcggagatgttgattccgaacaccgaactgaaggcaagaattgaagag
tttattaggtcccaggagctgaagaagcatggagaaggcttgaacatgcaaagctctaaa
ggaacaatacaaccaacaagtggagaaatgttaattgattag
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