Gleimia hominis: CJ187_003940
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Entry
CJ187_003940 CDS
T09100
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ghm
Gleimia hominis
Pathway
ghm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CJ187_003940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghm03019
]
CJ187_003940
03009 Ribosome biogenesis [BR:
ghm03009
]
CJ187_003940
Enzymes [BR:
ghm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CJ187_003940
Messenger RNA biogenesis [BR:
ghm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CJ187_003940
Ribosome biogenesis [BR:
ghm03009
]
Prokaryotic type
rRNA processing factors
CJ187_003940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
WIK65401
LinkDB
All DBs
Position
complement(870623..873079)
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AA seq
818 aa
AA seq
DB search
MSAEAGGAENSNQGRPPMGSDASGGIFFQAPQVAAGWDAGADQDWDEAGDENAEESRSRG
SKQKSGRRRNRRERDRSDSGGKQASAERNDEPGSKRGSDSEDEDGAEIETSRRRRRRRRT
ASHEEVVAEVEGVKGSTRLEAKRQRRREGRREKRRQVVTESEFLARRESVRREMIIRESD
GLNQIAVLEDGLLVEHFVARHTQQTMVGNVYLGRVQNVLPSMEAAFVDLGKGRNAVLYAG
EVNWEAAGVTSKPRQIEQALKSGDTVMVQVTKDPIGHKGARLTGQVTLAGRFLVFVPGGG
MTGISRKLPDAERSRLKKLLSKIVPKEAGVIVRTAAEGASEEQLRDDVERLSKQWDEIKQ
KEKRKPKAPTLLRSEPELAVRVVRDVFTEDFESLTVQGERTWETIHQYVSDLSPELVERL
RHWKSDDDVFAAHRIDEQLAKGMDRKVFLPSGGSLVIDRTEAMTVIDVNTGKFIGSGGTL
EETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFVDMVLESNRELVLRRLVECLGRDRTRHQ
VTEITSLGLVQMTRKRVGEGLVEAFSTPCECCDGRGFIVHDHPVEISDENEGRNRKRGNK
HGKKNREQDKAREQADSKQDQKREEVKSALSAIAAATASAHEQPQENGAANAESIENSTE
GAAKKSKKNGRKNRKNSQKAKRSSAKSGGGANSKENESNSGHGQTQGESDSHPADGTARK
TDAAGKAPRQEEDRDKLGNGRKESESEKAGKAPRKPRRRGVTMEQSAPEEAPAADAKPTP
KIARPVAATVETAEDSPVTRPRKKRHRRVVSTDTGGGE
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccgaagccggcggggctgagaattccaaccaggggcggcccccaatgggcagt
gacgcgtcgggaggaatctttttccaggccccgcaagtggccgccggatgggatgcggga
gcagatcaggactgggacgaagcgggcgacgagaacgctgaggaaagtaggtcgcgcggg
tcgaaacaaaaatctgggcggcgccggaaccgacgcgaacgagaccgcagtgacagcggc
ggtaaacaggccagtgctgaacgcaatgacgaaccggggagcaaacgcggctcggattca
gaagatgaggatggggcggaaatagaaacgtcccgccgtcgtcggcgccgccgccgcacc
gccagccacgaagaggtcgtagcggaagttgaaggggttaaagggtcaacccggctagag
gccaaacggcagcgcaggcgcgagggtcggcgtgagaaacgacggcaggtagttacggaa
tcggagttcttggcacgtcgcgaatcggtgcgtcgtgaaatgattatccgcgagtcagat
gggctgaaccagatcgcggtgctagaagacggactgcttgttgaacacttcgtggccagg
cacacgcagcaaaccatggtggggaacgtgtacctcgggcgcgtgcagaacgtgctgccc
tccatggaagctgcgttcgtggacctggggaagggccgcaacgccgtgctctacgcgggg
gaagtgaactgggaagcggcgggcgtaacctcaaaaccgcggcaaatagaacaggccctc
aaatctggtgacaccgtcatggtgcaggtaacaaaagacccgattggacacaagggcgca
cggctaaccggtcaggtcacgctcgcgggccggttcctcgtgttcgtacccggtgggggg
atgaccgggatttcccgcaaactgcccgacgcggaacggtctcgcttgaaaaaactgctt
tcgaagatcgtgccgaaggaagccggtgtgatcgtgcgcaccgcagcggaaggtgccagt
gaagagcagttgcgtgacgacgtggaacggctcagtaagcagtgggacgagattaagcag
aaagaaaaacgcaagccgaaagcaccaactctgctgcgttccgaaccggaactcgcggtc
cgggtggtgcgggacgtgttcacggaagacttcgaatccctcacggttcaaggggagcgc
acgtgggaaacgattcatcagtacgtgtctgacctgtcgccggagttggtggaacgcctg
cgccattggaagagtgacgacgacgtattcgctgctcaccgcattgacgagcagttggcg
aagggcatggaccggaaggtgttccttccctccggtgggtccctcgtgattgaccggacg
gaagcgatgacggtcatcgatgtgaatacgggtaagttcattggctccggggggaccttg
gaggagaccgttacgaagaacaacctggaggccgctgaggagattgtgcggcagctgcgg
ttgcgcgatatcggtgggattatcgtgatcgacttcgtggacatggtgctcgaatctaac
cgcgaactggtgctgcgccgcctggtggagtgcttgggcagagaccgcacccgacaccag
gtgacggaaattacttccctcgggctggtgcagatgacccgtaaacgcgtgggagaaggt
ttggtggaagcgttctccacgccatgtgaatgctgtgatggacgtggctttattgtgcac
gatcatccggtggaaatctcggacgaaaacgaagggcgcaaccgcaaacgtggcaacaag
cacgggaagaaaaaccgggagcaagacaaagcgcgtgagcaagcggattccaagcaagac
cagaagcgtgaggaagtgaagagcgcactcagtgcgattgccgcagcgaccgcgtcggcg
catgaacaacctcaggaaaatggggcggcaaatgcagaatccatagaaaacagtactgaa
ggcgccgcgaagaaatcgaagaagaacgggcggaagaaccgtaagaactcgcagaaggcc
aagagaagctcggcgaaatccgggggaggggcgaattctaaagaaaatgagtctaactcc
ggtcacgggcagactcagggggaatcggattcgcacccggctgacggcactgcccgcaag
accgatgcagcaggtaaagcaccgcgccaggaagaggaccgggacaagctggggaacggg
cgcaaggaaagtgagtctgagaaggcaggtaaggcgccgcgcaagccacgtcgacgcggg
gtaactatggaacagtcggcgccggaggaagcgccggcagcagatgcgaaaccgaccccg
aaaatcgcgcgtccggtggcggcgaccgtggaaacggctgaggattcccccgtgacgcgt
ccgcgcaagaagcgccatcggcgggtggtatctaccgacactgggggtggtgaataa
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