Gilvimarinus sp. DA14: NHM04_13255
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Entry
NHM04_13255 CDS
T08272
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
gil
Gilvimarinus sp. DA14
Pathway
gil03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gil00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NHM04_13255 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gil03021
]
NHM04_13255 (rpoB)
03400 DNA repair and recombination proteins [BR:
gil03400
]
NHM04_13255 (rpoB)
Enzymes [BR:
gil01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NHM04_13255 (rpoB)
Transcription machinery [BR:
gil03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NHM04_13255 (rpoB)
DNA repair and recombination proteins [BR:
gil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NHM04_13255 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
UTF59428
LinkDB
All DBs
Position
3031378..3035463
Genome browser
AA seq
1361 aa
AA seq
DB search
MAYSYTEKKRIRKDFGKLPHVMDVPYLLAIQLDSYRKFTQADASGEERFDVGLHAAFRSV
FPIASYSGNAALEYVSYVLGKPAFDVNECILRGVTYSAPLRVKVRLIIYDKDSANKAIKD
IKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDLVYVRIDRRRKLPASILLRALGFSSQEMLEMFFETSTFTLGDDG
QFTFEVVPSRLRGDVATFDIKDKKGKVLVEEGRRITARHIRQLEKAGVEEMAVPADYLLG
RALAKDVIDENTGEVLLECNSEITVDALEILMKAGVQTVETLYTNELDCGPFISDTLRID
PTRTQLEALVEIYRMMRPGEPPTKESAEALFNNLFFTQERYDLSAVGRMKFNRRLGREEE
FGEGTLSNDDIVDVLKTLIDIRNGKGVVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERA
VKERLSMAESEGLMPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYSRTNSYGFLETPYRRV
KDGQVTDEIEFLSAINEAEYVIAQASAKLDDSGKLVEDLVSVRHYGDFTLKSPAEVQFMD
VSPRQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLKAEKPLVGTGMERNVASDSGV
CVVAKRGGVIDRVDAGRIVVKVRDEEVESGDAGVDIYNLIKYTRSNQNTCINQRSIVNVG
DTIQRGDILADGPSVDMGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQ
ELTCIARDTKLGSEEITSDIPNVGENALNKLDESGIVYIGAEVGGGDILVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSSTKGTVIDVQVFTRDGLEKDQRSQDIEKAQLD
EVRKDLNEEYRIMEAATLERLRAVIGGQKVAAGKGVKKGEVLTDEVLDGLETEQWFKLRV
DSDELNEQIDRAEERLAECRKNLDERFEDKKRKLSTGDDLAPGVLKIVKVYLAIKRRIQP
GDKMAGRHGNKGVISVIMPIEDMPYDAKGEPVDIVLNPLGVPSRMNVGQILETHLGMAAK
GLGVKIDEMVRQQKAVNEVRGFLEEIYNETGDVYAKEDLANFSDEEVMDLANNLRGGVPM
ATPVFDGAKEHEIKALLRLADLPDSGQMQLYDGRTGDSFQRPVTVGYMYMLKLNHLVDDK
MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVTGRT
KMYKNIVDGDHRMEPGMPESFNVLVKEIRALGINMELEEDE
NT seq
4086 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatacactgagaaaaaacgtatccgcaaggactttggcaaattgccacac
gtcatggatgtgccttatctattggcgattcagctggattcttacagaaaatttacccag
gccgatgcgtctggagaagagcgttttgatgttggcctgcatgccgccttccgctctgta
ttcccaattgccagctattctggcaatgcagcgcttgagtatgtcagctatgtgcttggc
aaaccagcgtttgacgtgaacgaatgtattctgcgcggggtgacttattcagcaccgctg
cgtgtaaaagttcggctgattatctacgataaagattcagcgaacaaagcaatcaaagat
attaaagaacaagaagtctacatgggcgaaattccgctcatgaccgacaatggtaccttc
gtcattaacggtaccgagcgtgttatcgtgtctcagttgcaccgctcaccgggtgtgttc
ttcgaccatgataaaggtaagacgcactcctccggtaagctgctctacagcgctcgtatt
attccttaccgcggcagttggttggactttgagttcgatcctaaagacttggtttacgta
cgtattgaccgccgtcgtaagttgccagcatctatcttgttgcgtgcgctgggcttcagc
tcgcaagaaatgctggaaatgttctttgaaaccagtactttcaccctgggtgatgacggc
cagtttacctttgaggttgtgccgtcgcgtctgcgtggtgatgttgccacctttgatatc
aaagacaagaaaggcaaggttctggtcgaagaggggcgtcgcattaccgctcgccacatt
cgtcagctggaaaaagcgggtgtggaagaaatggccgtgcccgccgattacctgttgggt
cgtgcgctggcaaaagacgtgatcgacgagaacaccggtgaagtactgctggagtgcaac
agcgaaattaccgttgacgcgctggaaattctgatgaaggccggcgtgcagactgtcgag
actctgtacaccaatgaactggattgcggtccgtttatctccgataccctgcgtatcgat
ccgactcgcacccaactggaagcgctggtagaaatttaccgtatgatgcgtccaggcgag
ccgccgaccaaagaatctgccgaagcactgtttaataacctgttcttcacccaagagcgc
tatgacctttctgcggttggccgcatgaagttcaaccgtcgtctggggcgtgaagaagag
ttcggcgaaggcactctgtctaacgacgatatcgtcgacgtgttgaaaaccctgatcgat
attcgcaacggtaaaggcgttgtggatgacatcgaccacttgggtaaccgtcgtatccgt
tctgtgggtgaaatggccgaaaaccaattccgtgttggtttggttcgcgttgagcgcgct
gttaaagagcgtttgtctatggccgaaagcgaaggcctgatgccgcaggatttgatcaac
gccaaacctgtcgccgctgccattaaagagttctttggctcttcgcagttgtcgcagttt
atggaccagaacaacccgctgtcggaagttacccataagcgtcgtgtatcggccttgggc
cccggcggtttgacccgtgagcgcgctggctttgaggtgcgcgacgtacacccgacgcac
tacggtcgtgtctgcccaattgagacccctgaaggtccgaacattggtctgattaactcg
ctggcgacttactcgcgcaccaatagctacggctttttggaaaccccttaccgtcgcgtt
aaagacggacaggtcaccgacgagattgaattcctgtcggccattaacgaagccgagtat
gtaatcgcccaggcatctgccaagctggacgatagcggcaagctggttgaagacctggtg
tcagtacgtcactacggtgacttcaccctgaaaagcccggccgaagttcagtttatggac
gtatcgcctcgccaggtggtatcggtagccgcatccttgattccgttcctggagcacgat
gatgctaaccgcgccttgatgggttcaaacatgcagcgtcaggccgtgccgactctgaag
gccgagaagcctttggtgggtactggtatggagcgcaatgtagcctccgactcaggtgtg
tgtgtagtggcaaaacgtggcggtgtgattgatcgcgtcgatgctggccgcattgtggtt
aaagttcgggatgaagaagttgagtcgggtgatgcaggtgtagatatctacaacctgatt
aagtacacccgctctaaccagaacacttgtattaaccagcgctccattgtgaacgtgggc
gataccattcagcgcggcgacattcttgctgatggcccctcggtggacatgggcgagctg
gctctggggcaaaacatgcgcatcgcgtttatgccttggaacggttacaactttgaggac
tccatcctggtgtccgagcgtgtggtgcaagaagatcgctttaccaccattcacattcag
gagctgacttgtatcgcgcgcgataccaagcttggcagtgaagagatcacttcggatatt
ccgaacgttggtgaaaacgctctgaacaaactggacgagtccggcattgtttatatcggt
gccgaagtcggcggtggcgacattctggtgggtaaagtcacgcccaaaggcgagacccag
ctgactccagaagaaaaactgctgcgcgctattttcggtgagaaagcgtctgacgttaaa
gatacctctttgcgcgtaccatcgagcaccaaaggtacggttattgatgtgcaggtgttt
acccgtgacggtctggaaaaagatcagcgctcacaggatattgaaaaagctcagttggac
gaagttcgcaaagacctcaatgaagagtaccgcattatggaagcggcgactctagagcgt
ctgcgcgctgtcatcggtggccaaaaagttgctgccggtaaaggcgtgaaaaaaggcgaa
gttctgactgacgaagtactcgatggtctggaaaccgagcagtggttcaaactgcgcgtt
gacagcgatgaacttaacgagcaaatcgatcgcgccgaagagcgtctggccgagtgtcgc
aagaacctggatgagcgttttgaggataagaagcgcaagctgtccactggcgatgatctg
gcgcctggtgtgctgaaaatcgttaaggtttacctcgcgatcaagcgtcgtattcagccc
ggtgacaaaatggccggtcgtcacggtaacaaaggtgttatctcggtgattatgccgatt
gaagatatgccttacgacgccaaaggtgagcccgttgatatcgtgctaaaccctctgggt
gtgccctcgcggatgaacgtgggtcagattctggaaactcacttgggtatggcggccaag
ggtctcggcgtgaaaatcgacgagatggtgcgtcagcagaaagccgtaaatgaagtacgc
ggctttttggaagagatttacaacgaaaccggcgatgtctatgccaaagaagatttggct
aacttctctgacgaagaggtgatggaccttgccaacaacttgcgcggcggtgtgcctatg
gccactccggtatttgatggtgctaaagagcacgaaatcaaagccttgctgcgtctcgct
gatctgcccgattccggtcagatgcagttgtacgacggccgtaccggcgattcattccag
cgtccggtaaccgtcggctatatgtacatgctgaaactgaaccacttggtggacgacaag
atgcacgcccgttctaccggttcctacagcctggttacccagcagccgctgggtggtaag
gcgcagttcggtggtcagcgctttggtgagatggaggtatgggcactggaagcatatggt
gctgcttacaccttgcaggaaatgttgaccgtgaagtcggacgacgtaaccggccgaacc
aaaatgtacaaaaacattgtcgatggcgatcaccgtatggagccgggtatgcccgaatcc
tttaacgtactggttaaagagatccgagccctcggtatcaatatggagctggaagaggac
gagtaa
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