Gallaecimonas kandeliae: PVT67_01560
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Entry
PVT67_01560 CDS
T09225
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
gkn
Gallaecimonas kandeliae
Pathway
gkn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gkn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PVT67_01560 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gkn03021
]
PVT67_01560 (rpoB)
03400 DNA repair and recombination proteins [BR:
gkn03400
]
PVT67_01560 (rpoB)
Enzymes [BR:
gkn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PVT67_01560 (rpoB)
Transcription machinery [BR:
gkn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PVT67_01560 (rpoB)
DNA repair and recombination proteins [BR:
gkn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PVT67_01560 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
DUF1350
FapA
Motif
Other DBs
NCBI-ProteinID:
WKE65965
LinkDB
All DBs
Position
340424..344452
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRSQVLDVPFLLSIQLDSFTKFIEMDPDGQNGLEAAFRSVFPIK
SYSGNAELQYVSYRLGEPVFDVQECQIRGVTYAAPLRVKLRLVLFDREAAPGTVKDIREQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPASIILRALDYSAEDILDLFFEKVTFEIKKDKLMMT
LVPERLRGDTATFDIKDAKGEVLVEKGRRVTARHVRQMEKDGMDKLEVPTDYIIGKVLSK
DYVDQSSGEVIAVANQELSLDLLAKLSQAGYKAIETLYFNDLDHGAYMSETLRVDSTNSR
LEALVEIYRMMRPGEPPTREAAEALFNNLFFSEERYDLSTVGRMKFNRRVGRDSIEGSGV
LDNQDIIDVMKTLIEIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERL
SLGDMEGLMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT
RERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLSCFARTNEYGFLETPYRKVVDGQV
TDDVEYLSAIEEGQYVVAQANASVDENNRLLDELVPCRHKGESTYMNASDIQLMDVSPQQ
IVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERTVAVDSGVCVVAK
RGGTIDYVDASRIVVKVNEEEMLPGEAGIDIYNLIKYTRSNQNTCINQKPVCNVGDPIVR
GDVLADGPSTDLGDLALGQNMRVAFMPWNGYNFEDSILISERVVQEDRFTTIHIQELSCV
ARDTKLGPEEITADIPNVGESALSKLDESGIVYIGAEVKPGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDTSLRVPGSTYGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKD
LTEEFQILEAGIYDRAKNLLLSSGFDEAKLAKLDKAKLLEQSIDDEAKQVELEKIAEQLI
EIKADFDKKFEAKRAKIIQGDDLAPGVLKIVKVYLAVKRRVQPGDKMAGRHGNKGVISTI
VPVEDMPYDENGNPVDIVLNPLGVPSRMNIGQILETHLGLAAKGVGERINEMLQEQRELA
ELRDFLKKVYALGNYRQEVDIDSFSDDEVIRLAQHLKGGVPIATPAFDGCAEATIKDMLE
LAGLPRSGQIVLHDGRTGNAFERAVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDYSMEPGMP
ESFNVLLKEIRSLGINIELDEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtgtactcttacacagagaaaaaacgcattcgtaaggatttcggtaaacgttcccaa
gtactggacgtgcctttccttctctccatccagttggactccttcacgaagttcatcgag
atggatccagacgggcaaaacggcctggaagccgctttccgttctgttttcccgatcaag
agctattccggcaacgccgagctccaatacgtcagctaccgtctgggcgagcccgtcttt
gacgtgcaagagtgccagatccgtggtgtcacctacgcagctccgctgcgcgtgaagctg
cgcctggtgctgttcgatagagaagctgctcctggtaccgtcaaggatatccgcgagcag
gaagtctacatgggggagatccccttgatgaccgacaacggtacctttgtcatcaacggt
accgagcgcgtcatcgtgtctcagctgcaccgttctcctggcgtgtttttcgatcacgac
cgtggtaagacccactcctctggtaaggtcctctacaacgctcgcatcatcccctaccgt
gggtcctggttggattttgagttcgatcccaaagacaacctctttgtccgtatcgaccgt
cgccgcaagctgccggcgtccatcatcctgcgcgccttggattacagcgccgaggacatt
cttgatctgttcttcgagaaggtgactttcgagatcaagaaagacaagttgatgatgacc
ctggtgccggaacgcctgcgtggcgacaccgccaccttcgacatcaaagatgccaaaggt
gaagtgctggtcgaaaaaggccgccgcgtcaccgcccgccatgtccgtcagatggaaaag
gacggcatggacaagctggaagtgcccaccgattacatcatcggcaaggtactgtccaag
gactacgtagaccagtccagcggtgaagtgatcgccgttgccaaccaggaactgtccctg
gacctgctggccaagctgtcccaagccggctacaaggccatcgagaccctgtacttcaac
gatctcgaccatggagcctacatgtccgagactctgcgcgtcgactccaccaacagccgc
ctcgaggcgctggtcgagatctaccgcatgatgcgtcccggtgagccgccgacccgcgaa
gcggccgaagccctgttcaataacctcttcttctccgaagagcgttatgatctgtccacc
gtcggccggatgaagttcaaccgccgtgtcggccgtgacagcatcgaaggcagtggtgta
ctggacaaccaggacatcatcgacgtcatgaagaccctcatcgagatccgtaatggtcgc
ggtgaagtggacgatatcgaccacctgggcaaccgccgtatccgctccgtgggcgaaatg
gccgagaaccagttccgtgtcggcctggtgcgtgtcgagcgtgccgtgcgcgagcgcctg
tccctgggcgacatggaaggcctgatgccgcaggacctgatcaacgctaagccgatcagt
gccgccgtcaaggaattcttcggttccagccagctgtcccagttcatggaccagaacaac
cccctgtccgaggttacccacaagcgccgtatttcggccctgggccccggcggtctgacc
cgtgagcgcgccggcttcgaagtccgtgacgtacacccgacccactacggtcgcctgtgc
cccatcgagactcctgaaggtccgaacatcggtctgatcaactccctgtcctgcttcgcc
cggaccaacgagtacggcttcctggaaaccccctaccgcaaggtagtggatggccaggtc
accgacgacgtcgagtacctgtccgccatcgaagaaggccagtacgtggtggcccaggcc
aacgcctccgtggacgaaaacaatcgcctgctggacgagctggttccctgccgccacaag
ggcgaatccacctacatgaatgccagcgacatccagctgatggatgtaagcccgcagcag
atcgtgtccgtggccgcgtccctgatccccttccttgagcacgacgacgccaaccgcgcc
ctgatgggttcgaacatgcaacgtcaggccgttccgaccctgcgcgccgacaagccgctg
gtgggtaccggcatggagcgcaccgtagcggtcgactccggcgtctgcgtggtggccaag
cgcggtggtaccatcgactatgtcgatgcctcccgtatcgtggtcaaggtcaacgaggaa
gagatgctgcctggcgaagccggtatcgacatctacaacctcatcaaatacacccgttcc
aaccagaacacctgcatcaaccagaagccggtgtgtaacgttggtgaccccatcgtccgc
ggtgacgtactggccgacggcccgtccaccgacctgggcgacctggccctgggccagaac
atgcgcgtcgccttcatgccctggaacggctacaacttcgaggactccatcctcatctcc
gagcgcgtggtgcaggaagaccgcttcaccaccatccacatccaggaactgtcctgtgtg
gctcgtgacaccaagctggggccggaagagatcaccgccgatatccccaacgtcggtgag
tctgccctgagcaagctggatgagtccggtatcgtctacatcggtgccgaagtgaagcct
ggcgacatcctggtcggtaaggtcacccccaaaggtgaaactcagctgactccggaagag
aagctgctgcgtgccatcttcggtgagaaggcgtccgacgttaaggacacctccctgcgc
gtacccggttccacctacggtaccgttatcgacgttcaggtctttacccgtgacggcgta
gagaaggacaagcgcgctcttgaaatcgaagagatgcaactcaagcaggccaagaaggac
ctgaccgaagagttccagatcctcgaagccggtatctacgaccgcgccaagaacctgctg
ctgtcctccggtttcgacgaagccaagctggccaagctcgacaaggccaagttgctggag
caatccatcgacgacgaagccaagcaggttgaactcgagaagattgccgagcagctcatc
gagatcaaagccgacttcgacaagaagttcgaagccaagcgcgccaagatcattcaaggc
gatgacctggctcctggcgtcctgaagatcgtcaaggtctacctggccgtcaagcgccgc
gtgcagcccggcgataagatggccggtcgccacggtaacaaaggtgttatctccaccata
gtgcccgtggaagacatgccttacgacgagaacggcaacccggtcgacatcgtgctgaac
ccgctgggcgtaccttcccgtatgaacatcggtcagatcctggaaacccacctgggcttg
gcggccaaaggggtaggtgagcgcatcaacgagatgctccaggaacagcgagagctcgcc
gagctgcgcgacttcctgaagaaggtctatgccctgggcaactaccgccaggaagtggac
atcgacagcttcagcgacgacgaagtgatccgtctggctcagcatctgaaaggcggtgtg
ccgatcgctactcctgccttcgatggctgcgccgaagccaccatcaaggacatgctggaa
ctggctggtctgccccgttctggtcagatcgtgctgcatgacggccgcaccggtaacgcc
ttcgagcgtgctgtaaccgtcggttacatgtacatgctgaagctgaaccacctggtcgac
gacaagatgcacgcccgttccaccggctcctacagcctggttacccagcagccgctgggt
ggtaaggcccagttcggtggccagcgtttcggggagatggaagtctgggccctggaggcc
tacggcgccgcctacaccctgcaggaaatgctcaccgtcaagtctgacgatgtgaacggc
cgtaccaagatgtacaagaacatcgtggatggcgactactccatggagccgggcatgccc
gagtccttcaacgtactgctgaaggaaatccgctctttgggtatcaacatcgagctggac
gaagagtaa
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