Geobacillus sp. Y4.1MC1: GY4MC1_0411
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Entry
GY4MC1_0411 CDS
T01348
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
gmc
Geobacillus sp. Y4.1MC1
Pathway
gmc02020
Two-component system
gmc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
gmc00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
GY4MC1_0411
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
GY4MC1_0411
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gmc03021
]
GY4MC1_0411
Transcription machinery [BR:
gmc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GY4MC1_0411
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Sigma70_r4
HTH_23
MarR_2
HTH_10
HTH_17
HTH_IclR
TetR_N
Sigma70_ECF
HTH_Crp_2
HTH_12
Xre-like-HTH
HTH_Tnp_ISL3
HTH_24
Sigma70_r4_2
HTH_28
HTH_32
HTH_3
Fe_dep_repress
HTH_11
HTH_21
HTH_AraC
HTH_38
GerE
TrmB
DDE_Tnp_IS240
HTH_AsnC-type
LacI
HTH_33
HTH_26
DNA_pol3_delta_C
TBPIP
Motif
Other DBs
NCBI-ProteinID:
ADP73252
UniProt:
A0A7U3YCC1
LinkDB
All DBs
Position
447119..448432
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AA seq
437 aa
AA seq
DB search
MRAELWQEQRLKLSLTKELTQAIELLQYSAVELQSFLYEQSLDNPFLEIRDYRLKRSYRD
SSDKEKQRWIENISTHSETLSLHLIAQLPALSLSEREERVVRYMIASLDEDGYLRVEIEE
IAARLAISKQEAEKALQIIQSLEPAGVGARSLQECLYLQLKRLPHRDELAEQIVQHHFSL
FVEKAWKTLAKQLDIDIASLQRVWDLIRTLEPRPGIHYTKEMPHFIVPDLIIERSDEGDW
RIFCNDDVHPELAWNRAYEQKISGYRDGQVQSFIKDKYRQFLWLTKSLEQRKQTLLNIMH
VIVDKQKQCLEAGFAALKPLTMREVAEELGIHESTVSRAVKNKYVQTPFGTVELRRFFSN
AVSSAYADDDAASSVKVKMFIKQLIEQENKQRPLSDQKIADLLHERYGVAVSRRTVAKYR
EQLHIPSSAKRKQYVGK
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgagggctgaattatggcaagaacagcggctgaagttatcactgacaaaggaactgacg
caagcaatcgaattattgcaatattccgctgtggagctgcagtcgtttttatatgaacag
tcgttggataacccgtttctggaaattcgcgattaccggctgaagcgcagctaccgcgac
tcgtcggataaggaaaagcagcggtggatcgaaaatataagcactcattcagaaacgctt
tcattgcatttaatcgcacagcttccagccctgtcactttcagaacgcgaagaacgtgtc
gtacgttatatgatcgcttcccttgatgaagatggatatttgcgggtagagatcgaagag
atcgcggcacggcttgctatttccaaacaggaagcggaaaaagcgctgcagatcatccag
tcgttagagccggctggcgttggcgcccgcagtttgcaagaatgtttatatttgcagcta
aagcgtttgccacatcgcgatgagctggcggaacaaatcgtacagcatcatttttcgcta
tttgtcgaaaaagcgtggaaaacattagcgaagcagcttgacatagacattgcttcattg
cagcgcgtatgggatttaatccgcacgcttgagccgcgccccggcatccattatacaaaa
gagatgccccatttcatcgttcctgatcttattattgaacggagcgatgaaggggattgg
cgcatcttttgcaatgatgatgtgcatccggagcttgcctggaatcgggcatatgaacaa
aaaatttccggctatcgtgatgggcaagtgcaatcgtttatcaaagataaataccggcaa
tttttatggttaacgaaaagcttggaacagcgcaaacaaacgttgctcaatattatgcat
gtcattgttgataaacagaaacaatgtttggaagcggggtttgccgctttaaagcccctt
acgatgcgggaagtggcggaagagctcggcattcacgaatctactgtcagccgtgccgtg
aaaaacaaatacgtgcaaacaccgtttggcaccgtggaacttcgccgctttttttccaac
gctgtttcatccgcttatgcggacgacgatgccgcttcttcggtaaaagtgaaaatgttt
attaagcaattaattgaacaggaaaataagcagcggccgctttccgaccaaaagatcgcc
gacttgctgcatgagcggtacggtgtagccgtctcacgcagaacggttgcaaaatatcgc
gagcaactgcatattccgtcatcggcaaaacgaaaacagtatgtagggaagtga
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