Geobacter metallireducens: Gmet_1180
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Entry
Gmet_1180 CDS
T00295
Symbol
rny
Name
(GenBank) endoribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
gme
Geobacter metallireducens
Pathway
gme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gme00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Gmet_1180 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gme03019
]
Gmet_1180 (rny)
Messenger RNA biogenesis [BR:
gme03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Gmet_1180 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
HDOD
KH_1
KH_PNO1_2nd
KH_KhpA-B
KH_2
KH_NusA_2nd
Motif
Other DBs
NCBI-ProteinID:
ABB31418
UniProt:
Q39WF6
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All DBs
Position
1306210..1307772
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AA seq
520 aa
AA seq
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MKIEIAIVLILAAAGLGYFVGNMLRKRISDTLVSKAEELASKIVDDAKREAETITKEAEL
KAKDEVFQAKAEAERDAKEKRKDLQALEKRLQQKEENLDKKMNLFDQRDADLTKKDQALL
NREQGLVQKEERLDGLIAEQREKLESISGLSSTEAKKILMDAMESEAKLDAAKRIKVIEE
EARETADKKSKEIMALAIQRYAGEYVAERSVSVVALPSDEMKGRIIGREGRNIRALEAAT
GIDLIIDDTPEAVILSGFNPVRREVAKIALEKLITDGRIHPGRIEEVVAKAEEEVEQTIK
EAGDQAAFDLGVHGIHPEILKLIGRLKYRTSYSQNVYQHSLEVAFLCGIMASELGINVKQ
AKRAGLLHDLGKAVDHEVEGSHAVIGAELARKYGESPKIVHAIMAHHEDEKPNTVLAVLV
QAADALSGARPGARREMMETYVKRLDDLERIATSFVGVNNSFAIQAGREIRVMVSSDEVT
DERAVVLAKDIAKKIEAEMTYPGQIKVNVIRETRAIEYAR
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
ttgaagatagaaatcgccattgtcctaatccttgcagccgccgggcttggatactttgtg
ggaaacatgctgcgcaagcgtatttccgacaccctcgtcagcaaggcagaagagcttgcg
tcaaagattgtcgatgacgcaaagcgtgaagcggaaacgataaccaaggaagcagaactc
aaggccaaggatgaagtatttcaggcaaaggctgaggcggagcgagatgccaaggagaag
cgcaaggatcttcaggccctggaaaaacgtctccagcagaaggaagagaatctcgataag
aagatgaacctctttgaccaacgcgacgctgaccttacgaaaaaggatcaggcgcttctt
aaccgtgagcaaggacttgttcagaaggaagagaggcttgacggtctcattgcggagcaa
agggaaaaacttgagagtatttccggcctttcgtctacagaggcaaagaaaatcctcatg
gatgccatggagagcgaggccaagctcgatgccgccaagcggatcaaggtcatcgaggag
gaggctcgcgaaacggccgacaagaagtcgaaggagataatggccctggccatccaacgt
tacgcgggcgagtacgttgccgagcggtccgtgtcggttgtggcgctcccttcggatgag
atgaaagggcggattataggtcgtgaaggccggaatatcagggcattggaggctgctacc
ggtattgatctcatcatcgatgacactcccgaggcggttattctgtccggtttcaacccg
gttcgccgcgaagtggcaaagattgccctggaaaaactcatcactgatggccgcattcat
cccggccgcatcgaagaggttgtggccaaggccgaagaggaagttgagcagactatcaaa
gaagccggcgatcaggctgctttcgaccttggtgtgcacggcattcaccctgaaatattg
aagctgatcggtcgcctcaagtatcgcacctcttacagccagaatgtttaccaacactct
cttgaggttgcgttcctctgcggcatcatggcttccgagcttggtatcaacgttaagcaa
gccaagcgcgccggccttcttcacgatttgggcaaggcggttgatcacgaggtcgaggga
tcccacgcggttattggcgcggagcttgcgcgcaagtatggcgaatccccgaagatcgtt
cacgctatcatggcccaccacgaagacgagaagcccaataccgttcttgcggttcttgtt
caagccgccgatgctttgtccggtgcccgccccggagcccggcgcgagatgatggaaaca
tacgtgaaacgccttgatgatctggagcgtattgccacatcgtttgtcggagtcaacaat
tccttcgccattcaggcaggacgcgaaatcagggttatggtttcgagcgatgaagtcacc
gacgagcgggctgttgttctcgctaaagacatagcaaagaagatcgaagccgagatgacc
tacccggggcagatcaaggttaacgtgatccgggaaacccgggccattgagtatgcccgt
taa
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