Globicephala melas (long-finned pilot whale): 115847804
Help
Entry
115847804 CDS
T11080
Symbol
SKIC3
Name
(RefSeq) superkiller complex protein 3
KO
K12600
superkiller protein 3
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115847804 (SKIC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmf03019
]
115847804 (SKIC3)
Messenger RNA biogenesis [BR:
gmf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
115847804 (SKIC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_19
TPR_16
TPR_8
TPR_14
TPR_17
TPR_11
TPR_CcmH_CycH
TPR_12
ANAPC3
TPR_9
Fis1_TPR_C
ARM_TT21_C
Sel1
ARM_TT21_2nd
TPR_15
TPR_5
TPR_30
ARM_TT21_5th
TPR_20
Retrotran_gag_2
BTAD
TPR_6
PknG_TPR
Vps39_1
Motif
Other DBs
NCBI-GeneID:
115847804
NCBI-ProteinID:
XP_030703810
LinkDB
All DBs
Position
3:complement(76541014..76722976)
Genome browser
AA seq
1562 aa
AA seq
DB search
MSSKEVKTALKNARDAIRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQ
GAYKKAAELEPDQLLAWQGLASLYEKCNHINAKDDLPGVYQKLLDLYESVDKQKWCDVCK
KLVDLYYQEKKHVEVAQTWHKLIKTRQEGGAENQELHQLWKKLTQLLAESTEHQNNETQQ
LLLTAFENALDLSDKIPSEDHQVLYRHFIQCLSKFPHETARLKKACEGMINIYPTVQYPL
EVLCLHLIETGSLTDEGEQYCCRLVEMDSKSGPGLIGLGIKALQDKKYEGAVRNLTEGLK
ESPLCTAGWYHLAEAQVRMHKPKEAVLSCNQALKNIDNLGVSGGNLHQKNLCLHLKAEAL
IKLSDYESSEEAIRTLDQVSDANNIPGLLVLKGLAYLNKGSLDEASKIMEDLLSSYPDLA
EAHALEALIHFTKKEYLQAEKCFQLALEKDAEVAEYHYQLGLTYWSMGEETRKDKTKALT
HFLKAAKLDTYMGKVFCCLGHYYRDVVGDRNRARGCYRKAFELDDTDAESGAAAVDLSVE
LEEMETALAILTTVTQKASAGAAKWAWLRRGLYYLKAGQHSQAVADLQAALRADPKDFNC
WESLGEAYLSRGGYTTALKSFTKASELNPESTYSVFKVAAIQQILGKYKEAVAQYQLIIK
KKEDYVPALKGLGECHLMMAKAALVDYLDGKAVDHIEKALEYFTRALQHRADVSCLWKLV
GDACTSLYAVSLSKVNVSVLGVLLGQKEGKQVLKKYELLHLGGRCYGRALKLMSTSNTWC
DLGINYYRQAQHLAETGSKSNDLQELLEKSLHCLKKAVRLDSNNHLYWNALGVVSCYSGI
RNYALAQHCFIKSIQSEQINAVAWTNLGVLYLANEKIEQAHEAFKMAQSLDPSYLMCWIG
QALIAETVGSYDTMDLFRHTTELSMHTEGAIGYAYWVCTTLQDKSNRDTELYQYNILQMN
AIPAAQVVLSKYTERIQNYAPAFTMLGYLNEHLQLKKEAADAYQRAILLLQTAEDRDAYN
VTIRNYGRLLCSIGEYDKAIQAFKSTPLEELEDIIGFGLALFMKGLYKESSKAYERALST
VESEQDKAHILTALAIAEYKQGKMDVAKTLLFKCSILKEPTTESLQALCALGLAMQDATL
SKAALNELLKHCKQKDNDYQRCLLTSAIYALQGRTVAVQRQASKAVHSNPADPALWSLLS
RVVAQYTQRNAKGGAVAGNVAYILDSNHGKKALLYTAVNQLAVGSSSADGEKNTALKAIQ
KAALLSPGDPAVWAGLMAACHADAKLALVKNTQPKRMDLHLALLSAVSASNKEFFENYNQ
SLEKWSLSQAVTGLIDTRRIAEAEALCTKNLKSNPDQPAVILLLRQVQCKPLLESQKPLP
DAVLEELQKTVMSNSTSVPAWQWLAHIYQSQGMMSAAEMCYRKSLQVASQQGSWSGKLSS
LLRLALLALEVCMANISSDHWPSLVQEATTEALKLCFCPLAVLLQALLQFKRKMGARETR
RLLERVVYQPGYPKSIVSTARWYLLRHLHAKNDYELIDVLVNNAKTHGDTRALELNQKLS
SQ
NT seq
4689 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcaaggaagtaaagactgctctaaaaaatgctagagatgcaatcagaaacaaa
gaatacaaagaagctttgaaacattgtaagacagtgttaaaacaagagaaaaataactat
aatgcctgggtttttattggtgttgctgcagccgagctagaacaacctgatcaggcccag
ggtgcctataagaaagctgctgagctagagccagaccaattactagcttggcaggggtta
gcaagcttgtatgagaaatgtaatcacataaatgctaaggatgacttacctggtgtttac
caaaagctcctggatctttatgaaagtgttgacaaacagaagtggtgtgatgtctgtaag
aaacttgtggatctgtattaccaagaaaagaaacacgtagaggtggcccaaacatggcac
aaattgataaagacacggcaggaaggaggtgcggaaaaccaagaacttcatcagctatgg
aagaaattgacccagttgctggctgagagtactgagcatcagaataatgagacccaacaa
ttgctattaactgcttttgagaatgcactggacttatcagataagattcctagtgaagat
caccaggtgctttatagacatttcattcaatgtttatccaaatttcctcatgagactgct
aggttgaagaaggcttgtgaaggaatgataaacatctatcctactgtacagtatccatta
gaagtgctttgtttgcatttaattgaaacaggaagccttactgatgagggagaacagtac
tgttgtagattagtggaaatggattcaaaaagtggtccaggtctcattggtttaggcatt
aaagcattacaagacaaaaagtacgaaggtgctgttaggaacttaacagaaggattaaag
gaaagccctctctgcacagctggatggtatcatctggcagaagcccaagtcagaatgcat
aaacctaaggaagctgttctttcatgcaatcaagctctgaagaacatagataatcttggt
gtgtctggtggcaatcttcatcagaagaatctttgtcttcatttgaaagcagaggctttg
attaaactctcagattatgaatcttcagaggaagcaattcgtactcttgatcaggtttct
gatgcaaataatatcccaggacttttggttctcaaaggcttggcctatctgaacaaaggc
tcattagatgaagcttcaaagattatggaagaccttctctcttcttaccctgacctagct
gaagctcatgccctggaggctttgattcattttaccaaaaaggaatatctacaagcagaa
aaatgttttcagctagctcttgagaaagatgctgaagttgccgaatatcattaccaactt
gggttaacatattggtctatgggtgaagaaacaagaaaagataaaacaaaggctcttacc
cattttctaaaggctgccaaactggatacatacatgggcaaagttttctgctgtttaggt
cattattacagggatgtagtaggagatagaaacagagcccgtggatgttacaggaaagct
tttgaattagatgacactgatgctgaatctggagctgcagcagttgacttaagtgtagag
cttgaagagatggaaactgccttagctatcctaacaacagtcactcaaaaggcaagtgct
ggagcggcaaaatgggcctggcttaggcgaggactatactatttaaaagctggtcaacat
tctcaagcagtggctgatttacaggcagcattgagggcagacccaaaggacttcaattgt
tgggagtcattaggagaggcatatttaagcagaggtggctatacaacagccttgaaatcc
ttcacaaaagccagtgagctgaaccccgaatccacatacagtgtgtttaaggttgcagca
atacagcaaatcctaggcaaatataaagaggcggtagctcaataccagctgatcattaaa
aagaaagaagattatgtgcctgctttgaaaggtttgggtgaatgccatctcatgatggca
aaagcagctctagttgattatcttgatggaaaagctgtagaccacatagagaaagcactg
gaatattttactcgggctctgcagcatcgagctgatgtatcttgcctttggaagctagtt
ggggatgcttgtaccagtctgtatgctgtctcactatctaaagtgaatgttagtgtctta
ggagtcctcctaggtcagaaagaaggaaaacaagtattaaagaaatatgagctcctccat
cttggaggaaggtgttatggtcgtgcattaaaactgatgtctacatctaacacgtggtgt
gatcttggaattaattattatcgccaagcacaacatctagcagaaacaggcagcaagtcg
aatgatcttcaggagctattggagaaatctttgcattgtctgaaaaaggctgtgagactt
gacagtaataatcacttatactggaatgctcttggtgtagtttcatgttacagtggtatt
agaaattatgcccttgctcagcactgtttcatcaaatcaatccaatcagaacaaattaat
gctgttgcatggaccaacttgggagtgttataccttgcaaatgaaaagattgagcaagct
catgaagctttcaaaatggctcaatcccttgatccatcttatttaatgtgctggattgga
caagctctaattgcagagacagttggaagttatgacaccatggatctcttcaggcacact
acagaactcagtatgcacacggagggagcaataggttatgcgtattgggtctgtacaaca
ttgcaagataaaagcaacagagacacggagctgtaccagtacaacatcctccagatgaat
gcaattccagcagcacaagtggttttgagtaaatacacagaaagaattcagaattatgct
ccagctttcacaatgttgggttacttaaatgaacatctacaactgaagaaggaagcagca
gatgcataccagagggcaattttgttgttacagactgcagaagacagagatgcttataat
gttacaataagaaattatggcagattgttatgttctattggtgaatatgataaagctatc
caggcttttaagtcaacaccccttgaggagttagaagacatcataggttttggattggct
ttatttatgaagggtctgtataaagagagcagcaaagcctatgagagagccttgtctact
gttgaatcagagcaagacaaagctcatatcttgacagctctggcaatagcggagtataaa
caaggaaaaatggacgtagccaagacattgttatttaaatgctctatcttaaaagaacca
accacggaaagccttcaagccctgtgtgctctaggattggcaatgcaggatgcaacactg
tccaaagctgcacttaatgagttactgaagcactgcaaacagaaagacaatgattatcag
aggtgccttcttacttcagcgatctatgcactgcaaggtcgcactgtggcagtgcagaga
caagcatctaaagctgttcacagtaacccagctgatcctgctctttggtctttgttgtcc
cgagtagttgctcagtatactcaacgaaatgcaaagggaggtgcggtagcaggaaatgtg
gcttatattctggactcaaatcatggaaagaaggcactactatacactgcagtaaatcag
ttggctgtgggaagcagttcagcagatggtgagaaaaatactgcactaaaagccattcag
aaggcagctctcctttctccaggtgatcctgctgtctgggctgggctaatggcagcttgt
catgctgatgctaaactggccctagtgaagaacactcagccaaagaggatggatttacac
ttggcactgttatctgctgtttctgcttcaaacaaagaattctttgaaaattacaaccaa
tctcttgaaaagtggtctctctcccaagctgtcactggtctaatagacacaagaagaata
gctgaagctgaagccctctgcacaaagaatttaaaaagtaaccctgatcagccagctgtt
atcttacttttgagacaagttcaatgtaaaccactcctagagtcacaaaaacctctccca
gatgctgtacttgaagagctgcaaaaaacagtcatgtccaactcaacctctgttccagct
tggcagtggctggcacacatatatcagtcccaaggaatgatgagtgctgcagagatgtgt
tataggaagagtctacaagtagcatcccaacagggtagctggagtgggaaactctcaagc
ctgttgagactagcactgcttgcattagaagtctgcatggctaatatttccagtgatcac
tggccatccttggttcaagaagctacaactgaggccttgaaactttgcttttgtccgctt
gctgtccttttacaagctttgttacaattcaaacgcaaaatgggagcaagagagacacgg
cgacttttagagagagtggtgtatcagcctgggtatcccaaatctattgtttcaacagca
cgttggtaccttctgagacacttacatgccaaaaatgactacgagctcattgatgtgctg
gtaaacaatgccaaaactcatggagatacaagagcactggaactgaatcagaaattgtcc
tcacaataa
DBGET
integrated database retrieval system
