Globicephala melas (long-finned pilot whale): 115847853
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Entry
115847853 CDS
T11080
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115847853 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmf03019
]
115847853 (CNOT1)
Messenger RNA biogenesis [BR:
gmf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115847853 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
115847853 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
115847853
NCBI-ProteinID:
XP_030703906
LinkDB
All DBs
Position
19:complement(36267113..36369552)
Genome browser
AA seq
2383 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLK
LSKVQEVIFGLALLNSSSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQIRDSKGLHNVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLINPEIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMASL
SIGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPVGG
LGTGSLTGIGTGALGLPAVNNDPFVQRKLGTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTMVTTSTTTTVAKTVTVTRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYSLAGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIA
AHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQPMKQAWATDDVAQIYDKCITELE
QHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLITRFFRLCTEMCVEISYRA
QAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGV
LLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPG
FVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYK
GTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVD
MLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNLQ
LINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQ
LRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNP
AFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7152 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaatcggcacggt
cctgaggcagacaggcatttattacgctgcctattttcgcatgtggatttcagtggcgat
ggtaaaagcagtggcaaagattttcatcagactcagtttctgattcaggagtgtgcgtca
ctgattacgaagccaaattttatctccacgctgtcctatgccattgataatccattgcac
tatcagaagagtttaaagcctgcaccccacttatttgcccagctgagtaaagttctcaag
ttaagcaaagtacaagaggtaatttttggccttgccctcttgaattcttccagctcagat
ctcagaggttttgctgcccagtttatcaaacagaagcttccagatcttctgcgttcttac
attgacgcagacgtcagtggaaatcaagaaggtggcttccaggatatagcaatagaagtc
ctacacctcctcctctcccatctcctctttgggcagaagggagcctttggagttggacag
gaacagatagacgcttttcttaagacgctgcgcagagattttccccaggaacgctgtccc
gtggtgcttgcaccacttttataccctgaaaaacgggacatcctaatggacagaatcctg
cctgattctggaggggtagctaaaaccatgatggagagctctttggctgacttcatgcaa
gaagtgggctatggcttttgtgcaagtattgaagaatgtcgcaatataatcatgcagttt
ggtgttcgggaggtcacagctgcccaggttgcaagggttttgggaatgatggctcgaact
cattcaggattaacagatggaattccattacagagtatctctgctcctggcagtgggatc
tggagtgatggaaaagataaaagtgatggagcacaggcacacacgtggaatgtagaagtc
ttgattgatgttctcaaagaactgaacccaagtttgaatttcaaggaagtaacttacgaa
ctggaccatcctggatttcaaattcgtgacagtaaaggacttcataatgtagtgtatggc
attcagaggggtctgggtatggaagtgttccctgtagacctcatatacagaccttggaaa
catgcagaaggccagctctccttcattcagcattcccttataaatccagagatcttctgt
tttgccgactacccatgtcatactgttgccactgatattctgaaagcaccaccagaggat
gacaatcgagaaattgccacatggaagagcttggatttgattgaatctctgctgaggctc
gcagaggtagggcaatatgagcaagtcaaacaactcttcagcttccctatcaaacactgt
ccagacatgctggtattggccttactacaaatcaacacctcctggcacaccttgcgccat
gaactcatctccactctgatgccaattttccttggaaaccaccctaactcagctataatt
ttgcactatgcatggcatgggcagggacagtctccctcaatccgccaacttatcatgcat
gcgatggcagaatggtacatgcgaggggaacagtatgaccaggccaaattgtctcgaata
cttgatgtggcccaggacttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcttcacgtcgtgaatacctcaaacttgacaagtgg
ctcacagataaaattcgagagcatggagaaccttttatccaggcttgtatgactttttta
aagagacggtgtccttctattttgggtggacttgcaccagagaaagatcagcccaaaagt
gctcaacttcctccagaaactctggcgacaatgttggcctgtttacaagcttgtgcaggg
agtgtttctcaggagttatcagaaaccatcctcaccatggtagccaactgcagtaatgtt
atgaacaaggccagacagccaccacctggagttatgccaaaaggacgccctcctagtgct
agcagcttagatgccatttctcctgttcagattgaccctcttgctggaatggcatctctt
agtataggtggttcagctgcccctcacacccagagtatgcagggctttcctccaaatttg
ggttctgcattcagtaccccacagtcaccagcaaaagcatttccacccctttcaacccca
aatcagacaactgcattcagtggtattggaggactttcatcacagcttccagtaggtggt
cttggcacaggcagcctgactggtataggaactggggctcttggactccctgcagtgaat
aacgatccttttgtgcagaggaaactgggcacctctggactgaaccagcctacattccag
cagagtaagatgaaaccttcggacttgtctcaggtgtggccagaggcaaatcagcacttt
agtaaagagatagatgatgaagcaaacagctatttccagagaatatataatcacccacca
catccaaccatgtctgttgatgaggtattagaaatgctacagaggtttaaagattctacc
ataaagagagaacgagaagtatttaactgtatgctaaggaacttgttcgaagaatatcgg
ttcttcccccagtaccctgataaagagttacatataacagcctgcctgttcggtggtata
atcgaaaaaggactggtcacttacatggcattaggtttggccctacgatatgttcttgaa
gccttacgcaagccttttggatccaaaatgtattattttgggattgctgcactagataga
tttaaaaatagattgaaggactatccccagtattgtcagcacttggcttctattagtcac
tttatgcaatttccacatcatttacaggagtatatcgagtatggacagcaatctagagat
cctcctgtgaaaatgcagggctctatcacaacccctggaagtattgcactggctcaagcc
caggcccaggcccaggttccagcgaaagctccccttgctggtcaggttagcactatggta
accacctcaacaaccaccactgttgctaaaacagttacagtcaccaggccaactggagtc
agctttaagaaagatgtgccaccttctattaatactacaaatatagatacattacttgtg
gccacagatcaaacagagagaatcgtagagcccccagaaaatatccaagagaaaattgct
tttatcttcaacaacctctcccagtcaaatatgacacaaaaggttgaagaactaaaggaa
actgtgaaggaagaatttatgccttgggtttcacaatacctggttatgaagagagtcagt
attgagccaaactttcacagcctatattcaaacttccttgacacactgaagaatcctgaa
tttaataagatggttctgaatgagacctatagaaacatcaaagtgctcctgacctctgat
aaagctgcagccaatttctctgatcgttctttgctgaagaatttgggacattggctagga
atgatcacactagctaaaaataaacccatcttacacactgacttggatgtaaaatctttg
ctgctagaggcttatgttaaaggacagcaagagttgctttatgtagtcccctttgttgcc
aaagtcttagaatctagcattcgtagtgtggtttttaggccacccaacccctggacaatg
gcaattatgaatgtattagctgagctacatcaggaacatgacttaaagttaaacttgaag
tttgagattgaggtcctctgcaagaaccttgcattagacataaatgagctgaaacctgga
aacctcctaaaggataaagatcgcctaaagaacttagatgagcaactctctgctccaaag
aaagatgtcaagcagccagaagagctccctccaatcacaaccacaacaacttctacaaca
ccagctaccagtaccacctgtacagccacggttccaccacagccacagtacagttaccat
gacatcaatgtctattcccttgcgggcctggcaccacacattactctaaacccaacaatt
cccttgtttcaggcccatccacagttgaagcagtgtgtgcgccaagcaattgaacgggcc
gtccaggagctggtccatcctgtagtggatcgatcaattaagattgccatgactacttgt
gagcaaatagtcaggaaagattttgccctggattctgaggaatctcgaatgcgaatagca
gctcatcacatgatgaggaacttgacagctggaatggctatgattacttgcagggaacct
ttactcatgagcatatccaccaacctgaaaaacagttttgcctcagcccttcgtactgca
tccccacaacaaagggaaatgatggatcaggcagctgctcagttagctcaggacaattgt
gaattagcttgctgttttattcagaagactgcagtagaaaaagcaggccctgagatggac
aagagattagcaactgaatttgagctgagaaaacatgctaggcaagaaggacgcaggtac
tgtgatcctgttgtgttaacataccaagctgagcggatgccagagcaaatcaggctgaaa
gttggtggtgtggacccaaagcagctggctgtttatgaagagtttgcgcgcaacgtgcct
ggcttcttgcctacaaatgatttaagtcagcccacaggatttttagctcagcccatgaag
caagcttgggcaacggatgacgtagctcagatttatgataagtgcattacagaactggag
cagcaccttcacgccatcccaccaactttggccatgaacccccaagctcaggctcttaga
agtcttttggaggttgtagtattatctcgaaactctcgggatgccatagctgctcttgga
ttgctccagaaggctgtagagggcttactagatgccaccagtggtgctgatgctgacctc
ctgcttcgctacagagagtgccacctcttggtcttaaaagctcttcaagatggccgggcg
tatgggtctccatggtgtaacaaacagatcacaaggtgcctaattgagtgtcgggatgaa
tataaatataatgtggaggcagtggagttgctaattcgcaatcatttggtcaatatgcaa
cagtatgatcttcacctagctcagtcaatggagaatggtttaaactacatggctgtggca
tttgctatgcaattggtaaaaatcctgctggtggatgaaaggagtgttgcccatgttact
gaggcagatctgttccacaccattgaaaccctcatgaggattaatgctcactccagaggc
aatgctcctgaaggattgccccagctgatggaagtagtgcgatccaactatgaagcaatg
attgatcgtgctcatggaggccctaactttatgatgcattctgggatctctcaagcctca
gagtatgatgatcctccaggcctgagggagaaggcagagtatcttctgagggaatgggtg
aatctctaccattcagcagcagctggtcgtgacagtaccaaagctttctctgcgtttgtt
ggacaggtagagcttttggaaagaaagatgcaccagcaaggaatcctgaagactgatgac
ctcataacaaggttctttcgtctgtgtactgaaatgtgtgttgaaatcagttaccgtgct
caggcagagcagcagcacaatcctgctgctaatcccaccatgatccgagccaagtgctat
cacaacctggatgcctttgtccgactcattgcactgctagtaaagcactcaggggaggcc
accaacactgtcacaaagattaatctgctgaataaggtccttggtatagtagtgggagtt
ctcctgcaggatcatgatgttcggcagagtgaatttcagcagcttccctaccatcgaatt
tttatcatgctgctcttggaactcaatgcacctgagcatgtattggaaaccattaatttc
cagacacttacagctttctgcaacacattccacatcttgaggcctaccaaagctcctggc
tttgtgtatgcttggcttgaactgatctctcatcggatatttattgcaagaatgctggca
catacgccacagcagaagggatggcctatgtatgcacagctactgattgatttattcaaa
tatttagcgcctttccttagaaatgtggaactcaccaaacctatgcaaatcctttacaag
ggcactttaagagtgctgctggttcttttgcatgatttccctgagttcctttgtgattac
cattatggattctgtgacgtgatcccacctaattgtatccagctaagaaatctgattctg
agtgcctttccaagaaacatgaggctcccagacccattcactcctaatctgaaggtggat
atgttgagtgaaattaacattgcaccccggattctcaccaattttactggggtgatgcca
ccccagttcaaaaaggatttggattcctatcttaaaactcgatcacctgtcacttttctg
tctgatctgcggagcaacctacaggtatccaatgagcctggtaatcgctacaacctccag
ctcattaatgcactggtgctctatgtagggactcaggcaattgcacacatccacaacaag
ggcagcacaccttcaatgagcacgatcacccactctgctcacatggacatcttccagaac
ctggctgtggacttggacactgaaggtcggtatctcttcttgaatgcaattgcaaatcag
ctgcggtacccaaatagccacactcactacttcagctgcaccatgctctacctttttgca
gaggccaacactgaagctatccaagaacagatcacaagggttcttttggaacggttgatt
gtaaataggccacatccttggggtcttcttattaccttcattgagctgattaaaaatcca
gcgtttaagttctggaaccacgagtttgtacactgtgccccagaaattgaaaagttattc
cagtctgtcgcacagtgctgcatgggacaaaagcaggctcagcaagtaatggaagggaca
ggtgccagttag
DBGET
integrated database retrieval system
