Gadus morhua (Atlantic cod): 115551284
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Entry
115551284 CDS
T10832
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115551284 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmh03019
]
115551284 (cnot1)
Messenger RNA biogenesis [BR:
gmh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115551284 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
115551284 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
115551284
NCBI-ProteinID:
XP_030222801
Ensembl:
ENSGMOG00000012864
LinkDB
All DBs
Position
9:complement(17075009..17096085)
Genome browser
AA seq
2393 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNCHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISSLCYAIDNPLHYQKSLKPSAHLFTQLSKVLK
LSKVQEVIFGLALLISSNTDLRGFAAVFVKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQEQIEAFLNTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELLKTMMESSLADFMQEVGYGFCASMDECRNIILQYGVREVTASQVARVLGMMART
HSGLADGIPLQSISTPGSSIWSDGKDKSDGSQTHTWNVDVFIDVVKEVNPNLNFKEVTYE
LDHHGFMIRDSKGLKIVVCGIVRGLAMELFPVDLIYRPWKHAEGQLSFIQHSLMSPEVFC
FADYPCHTVAIDILKAPPEDDNKEIATWKSLDLVESLLRLSEVGQYEPVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEHYDQAKLSRILDVAQDLKSLSMLLNATPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFILACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLATMLACLQSCAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQIDPLSAMGSL
NLGGSTTSHTQNMQGFPSSLSSAFSNPQSPAKAFPPLTNPNPSTAFGGIGSLSSQLPGMD
SGPLGSGIGSSIGSGLGMPAVTSDPFGTRKMSTPGLNPPTFQQTDLSQVWPEANQHFSKE
IDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYRFFP
QYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDRFKN
RLKDYPQYCQHLASIGHFLQFPHHLQECVQYIEYGQQSRDPPVKLQGSITTPGSLALAQV
QAQSQQPGVPKAPQPGQASTLVTTTTATTTVAKTTTIARPTPSGFKKDVPVSTIMPSINT
TNIDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQ
YLVMKRVSIEPNFHSLYSNFLDTLKNPDFGKMVLSETYRNIRVLLTSDKAAANFSDRSLL
KNLGHWLGMITLAKNKPILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSVVF
RPQNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINDLKPGTLLKDKEKLKSL
EEQLSAPKKEAKPPEEMLPIVTTGDFLPFAVAPSTPAATTTACTTTGPPTPQFSYHDINV
YALAGLAPHINININIPLLQAHPQLKQCVRQSVERAVQELVHPVVDRSIKIAMTTCEQIV
RKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQ
REMMEEAAARIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPV
VLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQAW
ATDDVAQIYDKCMADLEQHLHAIPPALALNPQTQALRSLLEAVALARNSRDGIAALGLLQ
KAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKY
NVEAVELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVGHITEAD
LFHTIETLMRTSAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMHSGISQASEYD
DPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCT
EMCVEISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLL
NKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTF
HILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVE
LNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLP
DPFTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVS
NEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGR
YLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLL
ITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7182 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctacctggtggacaattta
acgaaaaaaaattacagagccagccagcaggaaatacagcatattgtgaattgtcacggc
cctgaggcagacaggcatcttcttcgctgtctattctctcatgtggatttcagtggcgat
ggtaaaagcagcggcaaggacttccatcagactcagtttctgatccaggagtgtgtgtcg
ctgatctcaaagccaaactttatctcttctctgtgctacgccattgacaatcccctgcat
taccagaagagtttgaagccttcagctcatttatttactcagctgagtaaagttctgaag
cttagcaaggtccaagaggtgatatttggccttgccttgttgatctccagcaacacagac
cttcgaggttttgctgccgtcttcgtcaagcagaagcttccagatcttctgcggtcatac
gtggacgcagaccttggaggcaatcaggaaggtggcttccaggacattgccatagaggtc
ctgcacctgctcctctcccatctgctgttcggccagaagggagccagtggtgtagggcaa
gagcagattgaggccttcctcaatactctctgcagagatttcccacaggagcgctgccct
gtggtgcttgcaccactgctataccctgaaaaacgcgacattctgatggataggatccta
ccagactctggagagctactcaagaccatgatggaaagttctcttgcagatttcatgcaa
gaagttggctatggcttctgtgcaagtatggacgagtgcaggaacataatcctccagtat
ggggtgagagaggtgacggccagccaggtagccagggtcctgggcatgatggctcggact
cactctggcctggctgatggcattccactacagtccatctcgactccaggaagcagcatc
tggagtgatggaaaggacaaaagtgatggctcacagacacacacctggaacgtggatgtt
ttcattgatgtggtcaaagaagtgaaccccaatctaaacttcaaggaggtgacgtatgaa
ttggaccaccatggcttcatgatccgggacagtaaaggcctgaaaattgtggtctgtggc
attgtaaggggcctggcgatggagctgttccctgttgatctcatctatagaccatggaaa
catgccgagggacagctttcgttcatccagcattccctgatgagtccggaggtattttgc
ttcgcagactacccatgtcacacagtagccattgacatcctcaaggcgccacctgaagat
gacaataaggagattgcaacctggaaaagcctggacctggtagagagcctactcagactg
tcagaggttggccagtatgagccggtgaagcagctgttcagcttccccatcaagcactgc
ccagacatgttggttctggcattgctgcagatttccacttcctggcacacacttcgccat
gagctaatttccaccctcatgcctatcttcctgggcaaccaccctaactcagccattatc
ttgcactatgcctggcatggacagggacagtctccatctatccgccagctaatcatgcac
tcgatggccgagtggtacatgaggggcgaacattacgaccaggccaagctctctcgtatt
ctggatgttgcccaggatttgaagtctctgtcgatgctgctgaatgctactccgtttgcc
tttgttattgatcttgctgcacttgcctctcgccgtgaatacctcaaactagacaaatgg
ctgacggataaaatacgagagcacggggagcctttcattctggcgtgtgtgacgttcctg
aagaggcgctgcccatcaatcatgggaggtctggctccagacaaggaccagcccaagagc
gcccagctgcccccggagacgttggccaccatgctggcctgcctacagtcctgtgctggg
agtgtgtcccaggaactgtctgagactatcctcaccatggtggcgaactgcagcaacgtg
atgaacaaagcccgccagccgccaccaggagtgatgcccaaaggccgcgcacccagcacc
agcagcctggatgccatctctccagtacagattgaccctttgtccgccatgggttccctg
aatctcggtggttccaccacctcacacacccaaaacatgcagggctttccgtcttcactg
agctctgctttcagtaacccacagtccccagccaaagcattcccaccgctgaccaatccc
aaccccagcacagcctttgggggcatcggcagcctgtcttcccagcttcctggcatggac
tcgggtcctcttggatcaggcattggctcaagcattggttctggtcttggaatgcctgca
gtaactagtgacccattcggcacaaggaagatgagcacaccgggactcaacccaccaacc
tttcagcagacggacctctctcaggtgtggccagaggctaaccagcactttagtaaggag
atcgatgatgaagccaacagctacttccagcgcatctataaccacccaccacaccccacc
atgtctgtagatgaggttttggagatgctgcagaggttcaaggactccaccataaagcgg
gagagagaagtgttcaattgcatgctgcgcaatctattcgaggagtatcggttcttcccc
cagtacccagacaaggagctccacatcaccgcctgcctgtttggaggcatcattgagaag
ggcctggtcacctacatggctctaggactggccctgcgttatgttcttgaagcattgcgg
aaaccctttggatcaaaaatgtactacttcggaattgctgctctagacaggttcaaaaac
agattgaaggattatcctcagtattgtcaacacttggcctcaattggccacttcttgcaa
tttccccatcatttacaagagtgtgtacagtatatcgagtatggccagcagtcacgggac
cctccggtgaagttgcaaggctccatcactaccccgggcagcctagccctggcccaggtc
caagctcagtcccagcagcctggtgtgcccaaagccccgcagcctggtcaggctagcacc
ctggtcaccaccaccaccgccacaactactgtggccaaaaccactacaatcgcaagacct
acacccagtggcttcaagaaggatgtgcccgtaagtactataatgccctcaataaacaca
accaacatagacacactgttggtagccaccgaccagacagagaggattgtagagccgccg
gagaacgtccaggaaaagatcgccttcatcttcaacaacctgtctcagtcgaacatgaca
cagaaggtggaggagctgaaggaaactgtgaaggaggagttcatgccctgggtgtctcag
tacctagtgatgaagcgtgtcagcatcgagccaaacttccacagcctgtactccaacttc
ttggacacgctgaagaacccagactttgggaagatggtcctcagtgaaacctacagaaat
atcagggtgctcttgacctcggacaaggctgcagccaatttctctgatcgctccctattg
aagaacttgggccactggctgggcatgatcaccctagccaagaataagcctattctttac
acggacctggaagtgaagtctctcttgctggaagcctatgtgaagggtcagcaagaactc
ctgtacgttgttccctttgtggccaaagtactggaatccagtttacgcagtgtggtgttc
agaccacagaacccctggaccatggccatcatgaatgttctagcagagctgcaccaggag
catgacctcaagcttaaccttaagtttgagattgaagttctttgtaagaacttgtctctg
gacattaacgacctcaagccgggtacgctgctgaaggacaaagagaagctgaagagcctg
gaggagcagctgtctgcaccaaagaaagaggccaagcctccagaggagatgctccctatt
gtcaccacaggagactttcttccatttgcagttgcaccttctacccctgctgccactacc
accgcctgcacaacgactgggccccccaccccacagttcagttatcatgacatcaatgtc
tacgctctggccggcctggccccgcacatcaacatcaacatcaacatccccctgctgcag
gcccaccctcagctgaagcagtgtgtgcggcagtcagtcgagcgggccgtccaggagctg
gtgcaccctgtggtcgaccgctccatcaaaattgccatgacaacctgtgagcagattgtg
aggaaggactttgccctggactcggaggagtctcgcatgcgcgtagcggcgcaccacatg
atgaggaacctgaccgccggcatggcgatgatcacgtgccgggagcccctcctcatgagc
atcgccaccaacctcaagaacagcttcgccgcggcgctgagggctcccacccctcagcaa
agggagatgatggaggaggctgcagccaggattgcccaggataactgtgaactggcctgc
tgcttcatccagaagacggcggtagagaaggctggacctgagatggacaagagattggcc
accgagtttgagctgaggaagcatgcacgccaggaaggccgtcgttactgtgaccccgtc
gtgctgacctaccaggctgagcgcatgcctgagcagatcagactcaaggtgggaggagtg
gacccaaaacaattggccgtgtatgaggagtttgcaaggaatgttccaggcttcctcccg
agcaatgacctctctcagcccaccggtttcctcgcccaaccaatgaagcaacaggcatgg
gctactgatgatgttgctcaaatctacgacaagtgcatggcggacttggagcaacacctc
catgccatccccccagccctggccttgaaccctcagacacaagccctgcgcagcctgctg
gaagccgtggccttggcccggaactccagggacggcatcgctgcacttgggttactgcag
aaggctgtggagggtctgctagatgcaaccagcggagctgatgctgacctgctgctgcgc
tacagagagtgccacctactagtgctcaaagccctgcaagacggacgcgcttatggaccg
cagtggtgcaataagcagatcaccaggtgtctgattgagtgccgtgatgagtacaagtac
aacgtggaggctgtggaattgctgatcagaaaccatctggttaacatgcagcagtacgac
cttcacctggcacagtcgatggagaatggactgcactacatggcagtagcctttgccatg
cagttggtgaagcttttgctggtagacgagcgcagtgttggccacatcacagaggctgac
ctcttccacaccatcgagaccctgatgaggaccagcgcacactccagggccaacgcacca
gaaggtctgccccagttgatggatgtcgttcgctccaactacgaggccatgatcgaccga
gctcatggaggacccaacttcatgatgcactctggcatctcccaggcatcggagtacgac
gaccctccgggcctgagagagaaggcagaatacctgctgagggagtgggtcaacctgtac
cactctgctgcagccggcagagacagcaccaaggccttctctgcctttgttggacagatg
caccagcagggcatcctgaagacagacgacctgatcaccaggtttttccggctatgcaca
gagatgtgtgtggagatcagctaccgggcacaggccgagcagcagcacaaccctgccgcc
agcgcagccatcatcagggccaagtgttaccacaacctggacgccttcgtccggctcatc
gccctgctggtcaagcactctggagaggccaccaacaccgtcaccaagatcaatctgctc
aacaaggtgctgggtattgtggtaggtgtgctgatccaggaccatgacgtgcggcagacc
gagttccaacagctgccctaccatcgcattttcatcatgctactgctggagctcaacgcc
ccggaacacgtcctggaaaccatcaacttccagaccctcacggccttctgtaacactttc
cacatcctgcggcccaccaaagcacctggctttgtttatgcctggctggagctcatctcc
caccgtatcttcattgcgaggatgctggcgcacacgccgcagcagaagggttggcccatg
tatgctcagctgttgatcgacctgttcaagtacctggcccccttcctgaggaatgtagag
ctcaacaaacctatgcaaattctctacaagggcacactgcgcgtacttctggtactgctg
cacgacttcccagagttcctgtgtgactaccactacggcttctgtgacgtcatcccaccc
aattgcatccagctccgcaatctcatcctcagtgcctttccgcgtaacatgaggcttcct
gaccccttcacacccaaccttaaggtggacatgctgagcgagatcaacattgcccctcgt
atcctcaccaacttcaccggggtcatgccctcccagttcaagaaggacctggactcctac
ctgaagacgcgctcaccagtaaccttcctctcagagctgcgcagcaacttgcaggtttcc
aacgagcccggtaatcgctacaacatccagctgatcaatgccctagtgctgtatgtgggg
acgcaggccatcgctcacatccacaacaagggaagcaccccatccatgagcacaatcacc
cactctgcacacatggacatcttccaaaacctggctgttgatctggacacggaggggcgt
tacctgttcctaaacgcgatagccaatcagctccgttacccgaacagccacacccattac
ttcagctgcaccatgctctacctgtttgctgaggccaacaccgaggccatccaggagcag
atcaccagggttctgctggaaaggctgatcgtgaacagaccacatccatgggggcttctc
atcacctttattgagctcatcaaaaatcctgccttcaagttctggagccacgactttgtg
cactgtgcacctgagattgaaaagctgttccagtccgtagctcagtgctgtatgggacag
aagcaggcccaacaggtgatggaaggcactggtgccagctag
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integrated database retrieval system
