Gimesia maris: GmarT_55960
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Entry
GmarT_55960 CDS
T06180
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
gmr
Gimesia maris
Pathway
gmr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gmr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GmarT_55960 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gmr03021
]
GmarT_55960 (rpoB)
03400 DNA repair and recombination proteins [BR:
gmr03400
]
GmarT_55960 (rpoB)
Enzymes [BR:
gmr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GmarT_55960 (rpoB)
Transcription machinery [BR:
gmr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GmarT_55960 (rpoB)
DNA repair and recombination proteins [BR:
gmr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GmarT_55960 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QEG19695
UniProt:
A0ABX5YVS3
LinkDB
All DBs
Position
complement(7251672..7255388)
Genome browser
AA seq
1238 aa
AA seq
DB search
MPIPAQRTIPTHSVKNFGKIEHGFELSDLTQIQTSSYASFLQADKSPRERKNQGLEEILR
EVFPIESYQGQYQLEYVKYELGKPRYTPTECRQLRMTYGRPFRVWLRLVKEQPIEEEVYL
GDLPVMIGGGEFIINGAERCIVSQLHRSPGVDFVLSSEPGEKKEYSCRVIPERGSWIELV
VGKKDTLGVRIDQSGKFSAMTLLRAMSKDYSSDTDLVKLFYDTKSEKISSSNAMEKLLGK
IVAEDVIYPAGHDRCGEVILDCCGTITEELIDEIVDTGLKTVEIVDEVTDVLVLQSIAED
PTATHEEALLRIYSRLRPGNPPQLERAIDLFKEKFFDVNRYRLGRVGRFRINRKFKQDVP
DTEMTLRPEDFINSIRYLVRLRVGESSAYVDDIDNLGNRRLRTIDELASDEIRKGFLKLR
RTVQERMTQKDVEEMSPRTLINPKSVSAAIDFFFGRSELSQVVDQTNPLSMLTHERRLSA
LGPGGLNRKRAGFEVRDVHISHYGRICPIETPEGTNIGLISSLSIFSKVDDYGFLVTPYR
YVKNGKLTDEVHWMRADEEAEVHVAPADTPVENGKFIEDRVMARHRDDVVWIAAGDVDYI
DVDPAQMVGISAGLIPFLEHDDANRALMGSNMQRQAVPLLIAEPPLVGTGMEVAVAQNSG
MVVRAEKAGKVTYVDGNVVEVNGKKYRLRKYEGLNERTCLNQTPAVSVGDQVKKGQILCH
SAAAADGLLALGRNVLVGFMSWDGYNFEDAIILSERLVKEDVYTSIHIDEFDVEIRETKL
GREEFTRDIPNVSEKALRHIGEDGIIKVGTRVRQGDILVGKVSPKAKAELTPEEKLLHAI
FGRAGEDVKNESLEASSGVEGIVIHTEKFARRMSLTDYERKQYDEELKKVEEEGNHQIAE
EFRDFLKTFENALGQPMVDDDGRKVREIPEDKFVSQYAHDFLSHLDDMDIRSPQKKADCR
AVIEDLWPNVEDVIETCDQKVNSMKRGEELPNGVLQMVKVYVASKRQISVGDKMAGRHGN
KGVISKVLPIEDMPFTEDGTPIDIMLNPLGVPSRMNVGQILETHLGWAAEKHGFRAVCPV
FDGAMESQIQEFLETAGLPKDGKAQLFDGRTGEAYEQKTTVGQIYMLKLHHLVDDKVHAR
STGPYSLITQQPLGGKARFGGQRFGEMEVWALEAYGAAYILQELLTVKSDDVEGRTKIYE
SMVNGENTLEAGTPASFDVLNNEIRGLGLNLQLEKNPG
NT seq
3717 nt
NT seq
+upstream
nt +downstream
nt
atgccgattccagcacagcgaactattcccactcattctgtcaaaaactttggtaagatt
gaacatggttttgagttgtctgatttaacacaaattcagacttcgtcctatgcgagtttt
cttcaagccgacaagtcgcctcgcgagcgaaaaaatcagggtctggaagaaattctccgc
gaagtgttcccgattgaaagctatcaggggcagtaccagttggagtacgtcaagtatgaa
ctgggcaaaccccgttacacgcccacagaatgtcgccagttgcggatgacctatggtcgt
cctttccgtgtctggctgcggctggtgaaagaacagccgattgaagaggaagtctacctg
ggcgatctgcccgtgatgatcggcggtggtgagttcatcatcaacggggctgagcgctgt
atcgtcagccagttgcaccgttcaccaggcgtcgactttgtactgagctctgaaccaggt
gaaaagaaagaatattcctgccgcgtgattccagaacgaggcagctggatcgagctggtt
gtcggcaaaaaagatacgctgggtgtgcggattgaccagagtggtaaattctcggcaatg
actctgctgcgagccatgtccaaagattattcttccgacaccgatctggtgaagctgttc
tacgatacgaaatcggaaaaaatttcgtccagcaatgccatggaaaaactgcttggcaaa
attgtcgcagaagacgtcatctatccggccggccatgatcggtgtggtgaggttattctg
gactgttgcggaaccatcactgaagagctgatcgacgaaatcgttgacaccggtttgaaa
accgttgagattgtggacgaagttaccgacgtgcttgtgcttcagagtattgctgaagac
ccgactgccactcacgaagaagcgctgctgcgaatttattcccgcctgcgtcccggtaat
cctccgcagctggagcgtgcgattgatctgttcaaagagaagttctttgacgtgaaccgc
taccgcctggggcgtgttggtcgcttccgtatcaaccgtaagttcaaacaggatgttccc
gatacggaaatgactctgcgtccggaagactttatcaactccattcggtatctcgtgcga
ttgcgtgtaggtgaatcctctgcctatgtggatgacatcgataaccttggtaaccgtcgt
ttgcgtacgattgatgaactggcctccgatgaaattcggaaagggtttctgaaactgcgt
cgtaccgtgcaggaacgcatgactcaaaaagacgttgaggaaatgtctccccgtacgctg
atcaatcccaagagtgtttctgcagccatcgatttcttctttggtcgcagtgaactttcg
caggtggttgaccagacgaacccgttgtccatgctgactcacgaacgtcgtctgtctgcg
ttggggcccggtggtttgaaccggaagcgtgcaggcttcgaagttcgcgacgtacacatt
tctcactacggacgaatctgcccgattgagacaccggaaggtaccaacatcggtctgatt
tccagtttgagtatcttttccaaagtcgatgattacggcttcctggtaactccttatcgc
tacgtcaaaaatggtaagttaaccgacgaagtgcactggatgcgtgccgatgaagaagcg
gaggtccatgtggctcctgccgacacgcctgtggaaaatggtaaatttatcgaagaccgt
gtgatggctcgccaccgtgatgacgtggtctggattgccgccggtgatgttgattatatc
gacgtggaccctgcccagatggtggggatctcggccggtctgattccgttcctggaacac
gacgatgcgaaccgtgctttgatgggttctaacatgcaacgtcaggcagtgcctctgctg
attgccgaaccaccactggtgggaaccgggatggaagtggcagtggctcagaactccgga
atggtcgtgcgggctgaaaaggccggtaaggtgacctatgtggatgggaacgttgttgaa
gttaacggcaagaaataccgtctgcgtaaatacgaaggtctgaacgagcgaacctgtctg
aaccagacacctgccgtgagtgtcggcgatcaggtgaagaaagggcagattctctgtcac
agtgccgctgccgctgacggattgctggcattgggtcgcaatgtgctggtgggcttcatg
tcatgggatggttacaactttgaagacgcgatcattctgtcagaacgcctggtgaaagaa
gacgtttacacttcgattcatattgatgaatttgatgtggaaattcgcgaaaccaaactg
ggtcgtgaagaattcacgcgtgatattcccaacgtcagtgaaaaggcgctgaggcatatc
ggtgaagacggcatcattaaagttggaacccgtgtccgccagggtgatatcctggttggt
aaggtttcaccgaaagcgaaagccgaactgacacccgaagaaaaactgctgcacgccatt
ttcggtcgtgctggtgaagacgtcaagaacgaatctctggaagcatccagtggtgtggaa
gggatcgtaattcataccgaaaaattcgcccgtcgcatgagcctgaccgattacgaacgc
aagcagtatgacgaagagctgaagaaggttgaagaagagggtaatcatcagattgctgaa
gagtttcgcgatttcctcaagacatttgagaacgcactgggtcagcctatggtggatgac
gatggtcgcaaggttcgtgaaattcctgaagataaattcgtatcgcaatatgctcatgat
ttcctgtctcacctggatgacatggatatccgcagcccgcagaaaaaagcagactgtcgt
gctgtgattgaagatctgtggccgaatgtggaagacgtgattgaaacctgtgaccagaag
gtcaacagtatgaagcgcggcgaagaactgccgaacggcgtactgcagatggttaaggtt
tacgtggcatccaaacgccagatctctgtcggtgataaaatggctggtcggcacggtaac
aaaggggtgatctccaaggttctgccgatcgaagacatgccgtttaccgaagatggtact
ccgatcgacatcatgttgaatccgctgggggttcccagtcgtatgaacgtgggacagatt
ctggaaacccacctgggctgggctgccgagaagcatggcttccgggctgtctgtccggtc
tttgacggggcaatggaatcacagattcaggagttcctggaaacggccggtttgcctaag
gatggaaaagcacagttgtttgatggtcgtacgggtgaagcctacgaacagaaaacaacc
gtgggtcagatttacatgctgaagcttcaccacctggtggatgacaaggtacatgcccgt
tcgacaggtccttactcattgattacacaacagcctctgggtggtaaagcccggttcggt
ggtcagcgattcggggaaatggaagtctgggcactggaagcttacggtgccgcttacatt
ctgcaggaactgctcactgtgaagagtgatgatgtcgaaggccgtaccaagatttatgaa
tcaatggtgaatggcgagaatacactggaagccggtacgccagccagctttgacgtgcta
aataacgaaatccgtggacttggtttgaatctacaactggaaaagaatcccggttaa
DBGET
integrated database retrieval system
