Gemmata massiliana: SOIL9_34260
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Entry
SOIL9_34260 CDS
T06634
Name
(GenBank) dead deah box helicase : DEAD/DEAH box helicase domain protein OS=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=Psta_1620 PE=3 SV=1: DEAD: Helicase_C
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
gms
Gemmata massiliana
Pathway
gms03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gms00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SOIL9_34260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gms03019
]
SOIL9_34260
03009 Ribosome biogenesis [BR:
gms03009
]
SOIL9_34260
Enzymes [BR:
gms01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.4 Acting on acid anhydrides to facilitate cellular and subcellular movement
3.6.4.13 RNA helicase
SOIL9_34260
Messenger RNA biogenesis [BR:
gms03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SOIL9_34260
Ribosome biogenesis [BR:
gms03009
]
Prokaryotic type
rRNA helicases
SOIL9_34260
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
VTR94288
UniProt:
A0A6P2CYS6
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All DBs
Position
1:4185997..4187553
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AA seq
518 aa
AA seq
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MIPPTDGDDWTVPESEQTHVPDEEPTSDESVDAPLLDETATADDDFDDETDDSETDPASD
PDHESAPPPETDPAMIFADLQLMRPLMDAINAAGYKHPTPIQEAVIPPALRGKDVIGQAQ
TGTGKTAAFLIPFLNRWRPHKLKGPIGVVMTPTRELALQIANEAEKLAPSSQFRCVPVYG
GTGMQRQLTGLTRGCDLVVGTPGRMLDHLQRGSMSLAQVRYAVLDEADRMLDIGFRDDIE
RILKRCPTERQTLLMSATVPDSIKRLVNRYMKDPVHLHMTPNTPTVDKIRQSYFTVDADR
KFELLKRVIEREKPRQCLIFVERKRWADNLYRDLKRAVPKAAVIHGDLPQSQREKIMAAF
RTGEIKYLIATDVMSRGIDVSNLSHVINYDLPMDIENYVHRIGRTGRIGKDGIAISFALP
EQGEQLTNIEMMINRLIESDQIEGFESAAPRAKGPARDVKVIFTGLDSVKPVKPEGEDDG
WGDDAPPPRAPEEGAGASDEAAKKTVFGRRGKRYSQRL
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
ttgattcccccaactgacggggacgattggaccgttcccgaatccgaacaaactcacgtc
cccgacgaagagccgacttccgacgagtcggttgacgcccctctactcgatgaaaccgcg
actgcggacgatgatttcgacgacgagacggacgattccgaaaccgatcccgcaagcgac
cccgatcacgaatccgccccgccgccggaaaccgatcccgcgatgatcttcgcggatttg
caactgatgcgcccactcatggacgccatcaacgcggccgggtacaagcacccgacgccg
attcaggaggcggtgattccacccgccctgcgcggcaaagacgttatcgggcaggcccaa
acggggaccggcaagacggccgcgttcctgatcccgttcctcaatcgctggcgcccgcac
aaactcaaggggccgatcggtgtcgtgatgacgccgacgcgcgaactcgcgctccagatc
gcgaacgaggccgagaagctcgccccgagcagccagttccggtgcgtgcccgtgtacggc
ggcaccgggatgcagcggcaactgacgggactgactcgcgggtgcgacctggtggtcgga
acaccgggccggatgctcgaccacctgcaacgcggctcgatgtcgctggcacaggtgcgc
tacgcggtgctcgacgaagcggaccggatgctcgacatcgggttccgcgacgacatcgag
cgcatcctgaagcggtgcccgaccgagcgccagacgctactcatgtcggcgaccgtgccc
gattcgatcaagcgcctcgtgaaccggtacatgaaagacccggttcacctgcacatgacg
ccgaacacgccgacggtggacaagatccgccagagctacttcacggtggacgcggaccgg
aagttcgagctgttgaagcgcgtcatcgagcgcgaaaaaccgcgccagtgcctcatcttc
gtggagcgcaagcgctgggccgacaacttgtaccgcgacctcaagcgcgcggtgccgaag
gccgcagtgattcacggtgacctgccgcaatcgcagcgcgaaaagatcatggccgcgttc
cgcacgggtgagatcaagtacctgatcgcgaccgacgtgatgagccgcgggatcgacgtc
tcgaacctgtcgcacgtcatcaactacgacctgccgatggacatcgagaactacgtccac
cggatcgggcgcacggggcgcatcggtaaggacggcatcgcgatctcgttcgcgctgccg
gagcagggcgagcaactcaccaacatcgagatgatgattaaccggctcatcgagtcggac
cagatcgagggcttcgagtccgcggcgccgcgggcgaaggggccggcacgcgacgtgaaa
gtgatcttcaccgggttggattccgtgaagcccgtaaagcccgagggcgaagacgacggt
tggggcgacgacgcgcctccgccgcgagcgccggaagagggtgccggtgcgtcggatgag
gccgcgaagaagacggtcttcggtcggcgcggcaagcggtacagtcagcgcctctga
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