Girardinichthys multiradiatus (darkedged splitfin): 124858990
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Entry
124858990 CDS
T08099
Name
(RefSeq) protocadherin-15-like isoform X1
KO
K16500
protocadherin-15
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
gmu03037
]
124858990
04515 Cell adhesion molecules [BR:
gmu04515
]
124858990
Cilium and associated proteins [BR:
gmu03037
]
Primary cilia and associated proteins
USH complex and associated proteins
124858990
Cell adhesion molecules [BR:
gmu04515
]
Cadherins
Protocadherins
124858990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
ECD
PCDH15_12th
Cadherin_CELSR2_9th
Cadherin_FAT4_N
Cadherin_2
Fibulin_C
Motif
Other DBs
NCBI-GeneID:
124858990
NCBI-ProteinID:
XP_047207323
LinkDB
All DBs
Position
22:complement(22027805..22353860)
Genome browser
AA seq
1735 aa
AA seq
DB search
MRRGRWLVRWLGTGMAILSLLTHSWGQNTGDWHYEECKLSRPGPPATIVTIEEESPNGTV
LVENMQINGRAQDPGRTISLTLLDNYDYWVILEPAQQRLYLNSTGRVLDRDPPNFITTIV
VNVQCTNELIGLVILHEVRIVVRDKNDNSPKFQQISYYVAINELTPVSTTIFTGFSGNNG
AIDIDDGPNGHVEYSILYNPSDPVSNNTVRVANTLSGNILLAERLNYEVKTRYLVLVQAS
DRAPHPPNRLTATTTLTVDVLDGDDLGPMFLPCILVNNSRDCQPLTYRAAIPEFTEPTKL
NPLNVTPHIQAEDMDRNIQPPSERPGIIFYILVGQPNTYPEYFSLNQTTAELRVLKPVNR
DLYQRFTLVIKAEQDNGHPLPAYANLIIEILDENNQAPYFQFATYQGYVSESSPVGTTIS
ASANLTAPLGIIALDNDIEETKDPMVKITLDDYTTIFSLTPTGIIRYLRILNLVDREKQM
TYTLRMVASDGVQQSSPVTVNILVIDANDNTPTFAQFSYSVQVFTDRQPGQTVLQLTATD
ADEGLNGLVTYEILAGAQGDFVINNHSGRITVAPGVTLTVGRSYALTVKASDNAPGNQRR
SSTTTVYIEILPPNNQSPPRFPILTYNLEISEAMRIGAILLNLQATDRENDPITYRIVSG
DSQKVFNLSETVGLLFLAKPLDRETTDQYRLIVTASDGNPGGTSTATVSIVVTDVNDNNP
TFDITLGTNFTVQEEKANLFVGQVNATDPDEGVNGQVYYRIVNFPDLFVISANGSIYTRR
PLDRELRNHYSLVVEASDGAVDPRKTTLTVSVQVLDIDDNSPVFSQQDYVVNVPENSPVG
TVVLKLTAVDADLFSNITYRIKTESARQLFSLNRITGELALLQTLDFESLAAMGVEVSFT
FQVEAVDQGGVMPPGQATVTVHITDMNDFSPIFSKDLYKGLVAPNAVKGTVITTVFAVDQ
DPPGTPASFVRYRVDMEKSLYSGNIFDVETETGRVITKVNLSEEPSVTFKLFVIAFDNGE
PVKTNSTLVEITVLQPSLIPIFTEEEYRFPPVKELSPVGTAVGTILAAAMNQTIFYSIVG
GNEQGHFKVNNSTGVIYIAQPLDYENVTSYILRVQADSLGVVMSNLRVPSKTNTAKVFID
VQDENDHPPVFSRKLYIGGVTEDTKIFSSVLKIVATDKDTGNFSAMAYRLIIPPTAEGQD
SFVIEVYTGIIKSAIMFRNMRRSYFKFDVIATDDYGKGFSSRSEVVVSVVNALDMQVVVS
TVPPHLVEEKKEELIRILERHVQDQIPGAKVIVESIGPRRHGDGFELEDYSKSDLMVYAI
DPLTNRAISRQELFKFLDGNVLEINKEFQPHLGEGGRILEIRSPDVVASVKKAAQAVGYT
EGALLALAIIIILCCIPAILIVMVTYKQFKERQAECAKTARIQMALPPGGKAVPAAATTA
NLYEELGDSSMRRGPGRQQQLLRPSLLRPEELSMESGIDPGQDQYTQDYYNYDQGYDFPQ
YGSRRRLISPMYDEYGEVIMEDDGYYYYSPHGPEPGRKKRIKLVVDRENETSSTGEESTT
ESQQNRLPNSHSNINGNIYLAQNGTIVRTRRPAHLNNLKMGSPCRLSKHFKKLEKLGVTH
EEPPPAVGNEVSENNMENGTGSCLHSNKDVNLNTLSSCGPLGSTITNLKTFGSKTSNAKA
IIDSGQCVSGEQEASVDRHKNSRDSLELHSDHTLSDEEELWMGPWNNLHIPMTKL
NT seq
5208 nt
NT seq
+upstream
nt +downstream
nt
atgcgacgggggcggtggcttgtcagatggctggggacaggaatggcaatcctctctttg
cttacccacagctggggccagaacaccggagactggcactatgaggagtgcaagctgtcc
cggccaggcccccctgcaaccatagtgaccattgaggaggagagccccaatggtacggtt
ttggtggaaaacatgcaaattaatggcagggcccaggacccaggcagaaccatctcactg
actctacttgacaactatgattactgggttatactggaaccagcacagcagagactttac
ctcaacagcactggacgtgttctggacagagatcctcctaatttcatcacaacgattgtg
gttaatgtccaatgcaccaatgagcttattggtctggtcattttacacgaagttcgaatt
gttgtaagggacaagaatgacaacagcccaaaatttcagcaaataagctactatgttgca
ataaatgagctcacgccagtttcaactactattttcaccggcttctcaggaaataatggt
gctatagacattgatgatgggcccaatggacatgtagaatacagcatcctttacaatccc
agtgatccggtatctaacaacacagtaagagttgcaaacacgctttcaggaaatattctt
ctggctgagaggctaaactacgaggtcaaaacacgctacctggtattggtccaagccagc
gaccgtgctccacacccaccaaacagactaacagctaccacaactctgactgtggatgtc
ttagatggagatgacctgggtcccatgtttctgccttgtattttagtgaacaacagccgt
gactgccaaccactcacctaccgtgctgctatccctgaatttactgaaccgactaaactg
aacccactgaatgtgaccccacatattcaggctgaggacatggacagaaacatacagcct
ccttcagaaagacctggcattattttttacatccttgttggtcaaccaaacacatatcca
gagtatttctccctgaaccagaccactgcagagttgcgtgttctaaagccagttaacagg
gacctgtatcaaaggtttacccttgtcataaaggcagaacaggacaacggacatccccta
ccagcatatgctaacctcattattgaaatcctggatgagaacaaccaggcgccgtatttc
cagttcgctacctatcagggatacgtgagcgagtcctccccagtgggtacaactatctct
gccagtgccaacctcacagctcctctaggaatcatcgctttggataatgacattgaagag
accaaagaccctatggttaagattaccctggatgactacaccacaattttcagcctgacc
ccaactggtataatccgctacctgaggatcctgaaccttgtggaccgggagaagcagatg
acctatactttaaggatggtggcatcagatggtgtccagcagagtagcccagtaaccgtc
aacatcctggttattgatgccaatgacaatactcccacgtttgcgcagttctcctacagc
gttcaagtctttacagataggcagccagggcagacagtgctacagttaactgcaacagac
gctgatgagggcttgaatggtctggtgacatatgagatcctggctggtgcccaaggagat
tttgttattaataatcactctggacgcatcactgtggcgcctggtgtcacgttaactgtg
gggcgatcctatgcactgacagtcaaagcctctgataatgcacccggcaaccagagaagg
agctccacaacaacagtctatattgagattttgccgcctaacaaccagagtcccccacgc
ttccccatcctcacctacaatctagagatcagcgaggccatgaggattggagctattctc
ctcaatctgcaggcaacagacagagaaaatgatccaatcacgtatcggattgtgagcggg
gattcccagaaggtcttcaacctctctgaaacggttggacttttatttctggccaagcct
ctggacagagagaccacagatcagtatcgtctaattgtcactgcttcagatggcaaccct
ggagggacatccactgctactgtgagcatagtagtgactgatgtcaatgataacaaccca
acatttgacatcacccttggcactaactttactgttcaagaagaaaaagccaatctgttt
gttggacaagtcaacgccactgatccagatgaaggagtcaacggccaggtttactacagg
attgtcaactttcctgacctgtttgtaatcagtgccaatggaagcatctacacaagacgt
cctctagacagggagttaaggaatcattatagccttgtagttgaggcctcagatggggcg
gtagaccccagaaaaaccaccttgacggtctcggtccaggttctggatatagatgacaac
agccctgtcttttcacaacaagactatgtggtgaatgtgcctgagaacagccctgtgggg
actgtggttctaaaactaactgctgtggatgcagacctcttctccaacatcacataccgc
atcaagactgagtcagccaggcagctcttctctcttaaccgtatcactggagagctagct
ttgctgcagaccctggactttgagagcctggcagctatgggtgtggaggtgtccttcact
ttccaggtagaagctgtcgaccaaggaggagtaatgccgccaggacaggctaccgtcaca
gtccacatcacagacatgaatgacttctcacccatcttcagtaaagacctgtacaagggc
ttggtggcacccaatgcagtgaagggaacagtcatcaccaccgtttttgctgtggaccaa
gacccaccaggcactccggccagttttgtgcgctacagagtggacatggaaaagtccctg
tacagcgggaacatctttgatgtagaaacagaaactggcagagtcatcaccaaggtcaac
ctcagtgaagagcccagcgtcacctttaagctgtttgtgattgcctttgataacggggag
ccggtgaagacaaacagtactttggtggagatcactgtccttcaaccctctctcatccca
attttcactgaggaagagtataggtttccacccgttaaagagctgtcaccagttggcact
gcagtggggactattttagctgctgctatgaatcaaaccatcttctactccattgttgga
ggaaatgaacaaggtcactttaaagtgaacaacagcacaggtgtcatctacattgcccaa
cccttggactatgaaaatgtaaccagctacatccttagggttcaggcagattctttgggg
gttgtcatgtccaacctacgtgtgccttccaaaaccaacacagccaaggtgttcattgat
gtacaggatgagaatgaccaccctcccgtcttttccaggaagctctacataggtggtgtg
actgaagacaccaagattttcagctccgtccttaaaatagtggccactgataaagacact
gggaacttcagtgccatggcataccgcctaattatacctcccacagcagagggtcaggac
agctttgtcatcgaggtctacactggaatcattaagtcagccatcatgtttcgaaatatg
cgcaggtcctacttcaagtttgatgttattgccactgatgactacgggaaaggtttcagc
agccgtagtgaagtggtggtttctgtagtcaacgcattggacatgcaggttgttgtctcc
actgtccctcctcatttagtggaagagaagaaggaggagctcattcgtattctggagcgc
catgtccaggaccagattcctggtgccaaggtgatcgtggagtccatcgggccacgccgt
cacggtgatggctttgaactagaggactactctaagtcagacctaatggtgtatgccatt
gacccactaacaaacagagccatttcacggcaggagctcttcaagtttcttgatggcaat
gtcctggaaataaacaaggagttccaaccacatctgggtgagggtggccgcatccttgag
atccgctcaccagacgttgtggccagtgtgaagaaggctgctcaagctgtggggtacaca
gaaggagcgctcctggccctggccatcatcatcatcctctgctgcatacctgccatcctc
atcgtcatggtcacctacaaacagttcaaagagcggcaagcagagtgtgccaagactgcc
aggatccagatggctttgccaccaggagggaaagcagttccagccgctgccaccactgct
aacctatacgaagagctgggcgacagcagcatgaggcgcggcccaggaagacagcaacaa
ctgctgaggccatctcttctcagaccagaggaactctccatggagtcaggcattgaccca
ggccaagaccagtacacacaagactactataattatgaccaaggatatgactttcctcag
tatgggagtcggaggaggctgatatcccctatgtatgatgaatatggtgaggtaatcatg
gaggatgatgggtattattactacagtccacatggcccagagcctggaagaaagaagcga
ataaagcttgtggttgatcgggagaatgagaccagttctactggagaggaaagcactaca
gagagtcagcagaacagacttcccaacagtcatagcaacatcaatggaaatatctacctc
gcacagaatggcactattgttcgaaccaggaggccagcccatctaaataacctaaagatg
ggctctccatgccgactgagtaagcatttcaaaaaacttgaaaaattaggtgtgactcat
gaggaaccccctcctgctgttggcaatgaggtttcagaaaacaacatggaaaacggaact
ggctcgtgtctacattctaacaaggacgtaaacctcaacactctgtcctcttgtggtccc
ttggggtccactattacaaacctaaaaacctttgggtccaaaaccagtaatgccaaggcc
ataattgacagtgggcagtgtgttagcggggagcaagaggcatctgttgaccgccacaaa
aacagtagggattcactggagttgcacagtgaccacacgttatcagatgaagaagaactg
tggatgggaccctggaacaacctgcacatacctatgacaaaactatga
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