Girardinichthys multiradiatus (darkedged splitfin): 124864656
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Entry
124864656 CDS
T08099
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DHX58
KO
K12649
ATP-dependent RNA helicase DHX58 [EC:
5.6.2.6
]
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
124864656
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
gmu04054
]
124864656
Enzymes [BR:
gmu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124864656
Pattern recognition receptors [BR:
gmu04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
124864656
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
RIG-I_C
ResIII
DEAD
Helicase_C
SWI2_SNF2
AAA_19
Hydantoinase_B
YqzE
Motif
Other DBs
NCBI-GeneID:
124864656
NCBI-ProteinID:
XP_047215475
LinkDB
All DBs
Position
Y:31785647..31789541
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AA seq
681 aa
AA seq
DB search
MADFGLRAYQKEVVERALNRENVIIWLPTGGGKTRAAVYVAKRHLGSTANAKVMVLVNKV
HLVDQHYNKEFEPHLGDHYKLMKVSGESEEKDFFGIVVKANDVIICTAQILYNALINKEE
AKHIELSDITLLTIDECHHTHKESTYNKIMRCYIEKKLKGQRPIPQVLGLTASPGTGGAK
TLEGAVEHVLEICANLDSVIVSTKSYTPELEEKVPGPKKTFDIVEKREEDPFGDYIKWMM
KQIHEYMNLPSDVRLRECGTQEYEADVVILEQRGVRENNRLLAQCALHLREYNNALLIND
TAXMMDAYRSLEEFYNAKLTTAIDGTDYFLVGIFQENQVELKNFATNHRFENPKMAKLES
TLLSQFGPDVNSRGILFSRTRRSTHCLHDWVLKNRTLQNAGIKAAILTGAGNGITYMTQH
EQADTIRNFRKGLLNLLISTSVAEEGLDIPECNLVVRYGLLTNEIAQQQASGRARARDSQ
YSVVAQKGGREVRRELINEYLEELTGKAIDRVQIMSEHEFRRKINELQTQAIIMSKVLED
RKTEKKNKYTASRIRILCRNCFAQVASGNYFRLLENAHYVNINPEFKNHYKPGGKVALER
HFEDXEPGCTVSCNNGNCNKDWGFEMKYKKVAQLPNLAIKNFALETPDGRVTVKKWKDVP
FMVEEFSFQHYCEANFPDLFD
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggctgattttggactgcgtgcctaccaaaaggaagtggttgaaagggcgctgaacaga
gaaaatgtcattatttggctgccaacgggaggtggaaagacccgagctgctgtctatgtg
gccaaaaggcatctggggagcacagcaaatgctaaagtaatggtgctggtgaacaaggtt
caccttgtggaccaacattacaacaaagagtttgagcctcatctgggagatcattataaa
ctcatgaaggtcagtggtgagagtgaggagaaggatttcttcgggatagtggtgaaggcc
aacgatgtgatcatctgcacagcacaaattctgtataacgccctgattaacaaggaagaa
gcaaagcacattgagctctcagacatcactctactgacaatcgatgagtgtcatcacacc
cacaaggagtcaacctacaacaaaataatgagatgttacatagagaaaaagctgaaagga
caacgaccaatacctcaggtcctgggtctcactgcgtcacctggtacaggaggtgcaaag
accctggaaggtgctgtggagcatgtgctggagatctgtgctaatttagattcagttatt
gtctcaactaaaagctacactcctgagctggaggagaaggtaccggggcccaaaaagacc
tttgacattgtggagaaaagagaggaggacccatttggggattatataaagtggatgatg
aagcagatccatgaatacatgaaccttccttctgacgtgagactcagagaatgtggtaca
caagaatatgaggcagatgtggtgattctggagcagcgaggtgttagggagaacaacaga
ctcttggcacaatgtgcactccatctcagagagtataataatgccctgctcatcaatgac
actgcgnnaatgatggatgcgtatcgctccctggaggaattctacaacgcaaagttaacc
acggccattgatggaacagactacttcctggtggggatttttcaagagaatcaggtggag
ctgaagaattttgccacaaatcatcgctttgagaacccaaaaatggcaaaacttgagagt
actctgctaagccagttcggtccagatgttaattctcgaggaattctcttctccagaacg
cgcaggagcacccactgccttcatgactgggtccttaagaacagaaccttgcagaacgct
gggataaaggctgctatcctcacaggggctggtaatggcatcacctatatgacacagcac
gaacaggcagacacaatccgcaacttccgaaaaggtttgctgaacctcttgatctccacc
agcgtggctgaggaaggcctcgacatccctgagtgcaacctggtggtacgctatggactc
cttacaaatgagattgcacagcagcaggccagtggacgtgcccgagcaagggacagccag
tattcagtggttgcccaaaaaggcggacgggaggtccgccgagaacttatcaatgaatac
ctggaggagctgactggaaaagccattgacagggtccagattatgagtgagcatgagttt
cgcagaaagataaatgagcttcaaacacaggccatcattatgagtaaagttttagaggat
cgtaaaacagagaagaaaaataaatatactgcttctagaatcaggatcctgtgcagaaac
tgttttgcacaagtggcatctgggaattacttcagacttcttgaaaacgctcactatgtc
aacataaatccagagtttaaaaatcactacaaaccgggtggaaaggtggcgctagagaga
cattttgaggactaggagccaggatgcacagtcagctgtaacaatggcaattgcaacaag
gattggggatttgaaatgaaatacaagaaggtggcccaactgccaaatctagccatcaag
aacttcgccctggagacgcccgatggaagggtcacagttaagaagtggaaggatgttcct
ttcatggtcgaggagtttagctttcaacactactgtgaggcgaacttcccagacttgttt
gattaa
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