Girardinichthys multiradiatus (darkedged splitfin): 124878049
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Entry
124878049 CDS
T08099
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124878049 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmu03019
]
124878049 (cnot1)
Messenger RNA biogenesis [BR:
gmu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124878049 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
124878049 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
124878049
NCBI-ProteinID:
XP_047237751
LinkDB
All DBs
Position
2:46566392..46600144
Genome browser
AA seq
2380 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYAIDNPLHYQKSLKPSAHLFTQLSKVLK
LSKVQEVIFGLALLNSSNTDLRGFAAQFIKQKLPDILRSYVDADLGGNQEGGFQDIPIEV
LHLLLSHLLFGQKGACGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDIPMDRIL
ADSGDLAKTIMESSLADFIQEVGYGFCASLDECRNIILQYGLREVTASQVARVLGMMART
HSGLSDGIPLQSISAPGSGLWSDGKDKSDGSQAHTWNVEVLIDIFKELNPNLNFKEVTYE
LDHPGFIIRDSKGLQIVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFVQHSLMNPDVFC
FADYPCHTVVIDLLKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFNFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLATMLACLQSCAG
SVSQELSETILTMVANRSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQMDTLTGISSL
SLGSTATSHTQSMQCFATSLSSALSNPLSPSKAFPPLPNPNPSTPFGVHSSISSQLPGMD
SGIGSSIGSSLGMSSVSTDPFGTRKMSTPGLNPPTFQQTDLSQVWPEANQHFSKEIDDEA
NSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYRFFPQYPDK
ELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKDY
PQYCQHLASIAHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSLALAQVQAQSQPPP
SLKAPQPGQPSTLVTTTTTTTTAAKTGTISRPTASTFKKDMPPSINTTNIDTLLVATDQT
ERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNF
HSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLA
KNKPILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSMVFRPQNPWTMAIMNV
LAELHQEHDLKLNLKFEIEVLCKNLSLDINELKPGNLLKDKDKLKNLEEQLSAPKKEAKP
PEEILPPSTTGDFVPFAATPTTPAATTTTCTTTGPPTPQFSYHDINVYALAGLAPHININ
INIALLQAHPQLKQCVRQSVERAVQELVHPVVDRSIKIAMTTCEQIIRKDFALDSEESRM
RVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQREMMEEAAARIAQ
DNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQI
RLKVGGVDPKQLAVYEEFARNIPGFLPSNDLSQPTGFLAQPMKQQAWATDDVAQIYDKCI
TDLEQHLHAIPSTLTMNPLTLGLRNLLEAVVLARTSRDGIAALGLLQKAVEGLLDATSGA
DADLLLRYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVEAVELLIRNHL
VNMQQYDVHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSHVTEADLFQTIEILMRTCA
HSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLL
REWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAE
QQHNPAASVAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLIQ
DHDVRHTDFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVY
AWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKPMQILYKGTL
RVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLS
EINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVSNEPGNRYNIQLIN
ALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRY
PNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFK
FWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7143 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagttatctggtggacaattta
acaaagaaaaactacagagccagccagcaagaaatacagcatattgtaaatcgtcacggt
cctgaggcagacaggcatttactacgctgtctcttctcccatgtggattttagtggcgat
ggtaaaagcagtggcaaggactttcaccagacacaatttctgattcaggagtgtgtatcg
ctgatatcaaagccaaactttatctctactctctgttacgccatcgacaatcccctgcac
taccagaagagtttgaagccatctgcccacctgtttactcaactgagtaaagtacttaaa
ctcagcaaggttcaagaggtaatttttggccttgctttgcttaactccagcaacacagat
cttcggggattcgctgcacagttcatcaagcagaaacttcccgatattctgcggtcatac
gttgacgcagatctcggaggaaaccaagaaggtggcttccaagacattcccatagaggtg
ttgcacctgctgctctcccatctactgtttggacagaagggagcctgtggggttgggcag
gagcagattgacgccttcctcaagacactttgccgagatttcccccaggagcgctgtcct
gtggtgctcgcaccactgctgtaccctgaaaaacgggacattcccatggacaggatctta
gcagactccggggacttagctaagaccatcatggagagttctcttgcagacttcattcag
gaagttggttatggcttttgtgccagtcttgatgaatgcaggaacataatcctccagtat
ggtttgagagaggtgacggccagccaggtagccagggttctgggaatgatggctcgtaca
cactccggcctatctgatggtatcccacttcagtccatctctgctccaggaagtggactt
tggagtgatgggaaggataagagcgacggttcacaggcacatacgtggaatgttgaggtc
ctcattgacatcttcaaagaactgaatcctaacctgaacttcaaagaggtgacgtatgaa
ctggaccaccctggatttataatccgggatagtaaaggcctgcagatcgtggtgtatggg
atccaacgagggctagggatggaggtcttccctgtggacctaatttaccgtccgtggaag
catgctgagggacagttgtcgtttgttcagcactccctgatgaacccagatgtgttctgc
tttgctgactacccctgtcacactgtggtcattgacctcctgaaagccccacctgaggat
gacaacagggagattgctacatggaaaagtctggacttggtggagagtcttctcagactc
tctgaggttgggcaatacgagcaggtgaagcagctcttcaattttccaatcaagcactgc
ccggacatgttggtgttggcactactgcagatctccacctcctggcacacgttacgccat
gagctcatttccactctcatgccaatctttctgggcaaccaccccaactctgccattatt
ctgcactatgcgtggcatggacaggggcagtctccttccattcgtcagctgattatgcat
tcaatggctgagtggtacatgagaggggagcaatatgaccaggccaagctgtctcgtatc
ctggatgtggcccaggacctaaagtctctctcgatgctgctgaatggtactccatttgcc
tttgtcattgacctcgctgcacttgcctcccgccgtgaatacctcaaacttgataaatgg
ctgactgacaaaatccgagagcatggggaaccgtttatccaggcatgtgttacatttctg
aagagacgctgcccatccatcatgggaggtctggctcctgacaaagaccagcccaaaagt
gcccagctacccccagagactttagccaccatgcttgcctgtttgcagtcatgtgctggg
agcgtgtcccaggaattgtcggagacgatcctcaccatggttgccaatcgtagcaacgta
atgaataaagctcggcagcctccaccaggagtgatgccaaaggggcgcgccccaagcacc
agcagcctggatgccatctcacctgtacagatggacactctgaccggcataagctccttg
agtctgggcagcaccgccacctcccacactcagagcatgcagtgcttcgccacctcactg
agctcagctctcagtaatcctctgtccccttcaaaggccttcccacctcttccaaaccct
aaccccagcacaccttttggggttcatagcagtatcagttcacagcttcctggcatggac
tctggtatcggctccagcattggctccagtctgggaatgtcatcagtaagcacggatcct
tttggcaccaggaagatgagcacacctggcttgaaccctcctacctttcagcagactgat
ctctctcaggtgtggccagaggctaaccagcactttagtaaggagattgacgatgaagca
aacagttacttccagcgtatctacaaccacccacctcacccgaccatgtctgtggacgaa
gtgttggagatgcttcagaggtttaaggactcgaccatcaagcgagaacgagaggtgttc
aattgcatgcttcgaaacttatttgaggaatacagattcttccctcagtacccagacaaa
gaactgcacataactgcctgcctctttggtggcattattgagaagggtctcgtcacctac
atggcgctgggtctggccctgcgatacgttctggaagccttgcgcaaaccattcggatcc
aaaatgtattattttggaattgctgcactggatagattcaaaaacagacttaaagactac
cctcagtattgtcaacatctggcctcaattgctcacttcttgcagtttcctcaccattta
caagagtacatcgaatatggccaacagtcacgggaccctccggtgaagatgcagggatcc
atcactacacctggaagtctcgctctggcccaggttcaggcccagtcccagccgcctccc
agcctcaaagccccacagccaggccaacccagcaccctcgtcaccaccaccaccacaaca
accactgcagccaaaacgggcaccatctcaaggcccacagccagcaccttcaagaaggat
atgcctccttccataaacactactaacatcgacacgctgctggtggccaccgatcaaaca
gaacggattgtagaacctccagagaatgtccaagagaagattgcttttatcttcaataac
ctttctcagtccaacatgacacagaaggttgaagagttgaaggaaaccgtaaaggaagag
tttatgccatgggtgtctcagtacctcgtgatgaagcgtgtcagcattgagccaaacttt
cacagtttgtattccaactttttggacacgctcaaaaaccccgagtttgtcaagatggtt
ctcaatgaaacttacagaaatatcaaggtccttctaacctctgacaaggcagctgctaac
ttctctgaccgctccctgctgaagaaccttggccactggttgggcatgattacactggcc
aaaaacaagcctatcctctacacagacctggaactcaaatctctgttactagaagcctat
gtgaaaggccagcaggagctcctttatgtggttccctttgtggccaaggtcttggagtct
agtctacggagcatggtcttcaggcctcagaacccttggaccatggccattatgaatgtt
ctcgctgagctccatcaggagcatgacctcaagttgaacttgaagtttgagattgaagtt
ctgtgtaagaacttgtctctggacatcaatgagctgaagccaggaaacctgctgaaggac
aaagacaagctgaagaacctggaggagcaactatctgcaccaaagaaagaagcaaagcca
ccagaggagatcttgccaccttctaccacaggagactttgttccatttgcagctactccg
acaaccccagctgctaccacaaccacgtgcaccaccactgggcctcccactccgcagttc
agttaccatgacatcaatgtgtacgccctggcaggcctggctccacatatcaatataaat
atcaatatcgctctgctgcaggctcatcctcagctcaaacagtgcgtacgtcagtctgtg
gagcgagcggtccaggagcttgtgcacccagtagtggaccgttccatcaaaattgcaatg
acgacatgtgagcagatcatcaggaaggactttgccctggattcagaggagtctcgcatg
cgtgtggctgcccaccacatgatgagaaacctgacggctggcatggccatgatcacgtgc
cgcgagcctctgctgatgagcatcgccaccaacctaaagaacagctttgctgctgcactc
agggctccaaccccacagcaaagagaaatgatggaagaggcagcagccaggattgctcag
gacaactgtgaactggcttgttgcttcattcagaaaacagctgtggaaaaggctggacct
gaaatggacaagagactagccacggagtttgaactgaggaagcatgcacgccaggaagga
cgccgctactgtgatcctgtcgttctgacctaccaggctgagcggatgcccgaacagatc
agactcaaggtgggaggagttgaccctaaacagctggctgtttatgaggagtttgcgagg
aacattccaggtttcttaccgagcaacgatctctcccaacccactggcttcctggctcag
cccatgaagcaacaggcctgggccactgatgacgtggctcagatctacgataaatgcatc
acagacttggagcagcaccttcatgccattccttcaactctcaccatgaaccctctgacc
ctgggcctgcgaaacctactggaagcggtggttttggcacgaacctccagggatggcatc
gctgcactaggcctcctgcagaaggctgttgaaggtctcctggatgctaccagtggggcg
gatgctgacttgctgcttcgctacagagagtgccacttgttggtgctgaaagccctgcag
gacggacgggcctatggaccacagtggtgcaataagcagattaccaggtgtctgattgaa
tgccgcgatgaatacaaatataacgtggaagcagtggagcttctgatcaggaaccatctg
gtcaacatgcagcagtatgatgtgcacctggcacagtcaatggaaaacggactgcactac
atggcggtcgctttcgccatgcagttggtgaagctgctgctggtcgacgaacgcagcgtg
agccacgtcactgaagcggacctcttccagacgattgagattctgatgagaacctgtgca
cactccagagccaacgcgccagaggggcttccccagctgatggatgttgttcgctccaat
tatgaagccatgattgaccgggcccatggaggacccaacttcatgatgcactctgggatc
tcccaggcttcagaatacgatgatcctccaggtctgagggagaaggcagagtacctcctg
agggagtgggtcaacctgtatcactcagctgcagctggccgggacagcaccaaagctttc
tctgcctttgtcggccagatgcaccagcagggcattctgaagaccgacgacctgatcacg
cggttcttccggctgtgcacagaaatgtgcgtggagatcagctatcgagcacaggccgaa
cagcagcacaacccagcagccagcgtagccatcatcagagccaaatgttaccacaacctg
gatgccttcgtcaggctcatagccctacttgtcaagcactctggagaggccactaacacc
gtgacaaagatcaaccttctcaacaaggtcctggggattgttgtcggcgtgctgatccag
gaccacgatgttcgtcacacggacttccagcagctgccgtatcatcgcatttttatcatg
ctgctgttggagctcaatgcccccgaacacgtcctggagaccatcaactttcagacccta
actgccttctgcaacaccttccacatcctgagacccactaaagctcctggcttcgtgtac
gcctggctggaactgatctcccatcgcatcttcatcgccaggatgctcgcacacacgccc
cagcagaagggttggcccatgtacgcacagctgctgattgacctctttaagtatctggcc
cccttcctgaggaatgtagagctcaacaaacctatgcaaatcctctacaagggaacactg
cgggtgcttctggtcctgctgcatgacttcccagagttcctctgtgattaccattatggc
ttctgtgacgttatcccacccaactgcattcagctccgcaaccttatcctcagtgccttc
ccccgcaacatgaggctcccggaccctttcacgcccaacttaaaggtggacatgctgagt
gagataaacatcgctccccgtatcctcaccaacttcacaggcgtcatgccgtctcagttc
aagaaggatctggactcctacctgaagacgcgctctcctgtgactttcctgtctgagctg
cgcagcaacctgcaggtgtcgaacgaaccagggaaccgctacaacatccagctgatcaat
gctttagtgttgtatgttggcacacaggccatcgctcacatccacaacaagggcagcacc
ccatctatgagcaccatcacccactctgcacacatggacatcttccagaacctggctgtg
gacctggacactgaagggcggtatttgttcctgaacgcaatcgccaatcagctgcgatac
cccaacagtcatactcactacttcagctgcaccatgctctacctgtttgctgaggccaac
actgaggccattcaggagcagatcacgagggttctattggaaaggctgattgtgaaccgg
cctcacccgtggggtcttctgatcaccttcattgagctgatcaagaatcctgccttcaag
ttctggagtcacgactttgtacactgtgcccctgagattgaaaagttgttccagtctgtg
gctcagtgctgcatggggcagaagcaagcccagcaagtgatggagggcactggtgccagc
taa
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