Girardinichthys multiradiatus (darkedged splitfin): 124879156
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Entry
124879156 CDS
T08099
Name
(RefSeq) collagen alpha-1(IX) chain-like isoform X1
KO
K08131
collagen type IX alpha
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu04510
Focal adhesion
gmu04512
ECM-receptor interaction
gmu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124879156
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
124879156
09142 Cell motility
04820 Cytoskeleton in muscle cells
124879156
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
gmu00535
]
124879156
Proteoglycans [BR:
gmu00535
]
Extracellular matrix (ECM) proteoglycans
Others
124879156
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
124879156
NCBI-ProteinID:
XP_047239474
LinkDB
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Position
13:complement(8724356..8788589)
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AA seq
949 aa
AA seq
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MALCCSGLKRKQKCHPSVSACSLLCVALLSHLAAPTLGQLDLSRLDGDTVCPPIRNGQDD
LPGFDLITQFQLDVIPLKGVRKVDGSTPLQVAYRLDREANFQIPTMLNFPRGFPDEYSFM
TTFRMIKNTVGKVWNVWQIVDEDGHKQAGLRLNGDQQALEYFLMGADGNLQTVTFPGLSV
LFNTKWHKVMIGIEREQVTLYVDCQPVDQKPIKGKGPINTDGDTLIGRLDADPDASVVFE
LQWMLIHCDPKRAQRESCNELPATEMFANAEPDKSLQGPPGPPGPEGPRGVPGESGRDGR
DGVPGTPGIPGAPGSKGEKGEIGLPGQRGLPGLPGSSGPIGPMGPRGPVGERGLPGFPGP
PGPSGPSSEGPAGPPGKPGTPGDEGNIGPEGPPGPRGGPGIAGPPGPPGPPGPVGPPGAN
SEGSGEACPATCPAGPQGLHGLPGMKGHKGLPGEPGRDGEPGEKGGVGEPGPQGPPGRMG
DDGQRGPIGFPGTPGEKGDRGAPGYNGVSGPTGPPGAPGVEGARGRQGLPGPKGDDGAVG
PKGQPGVKGEKGEIGEPGEDGLDGFPGANGTKGEPGAPGAVGIRGIVGIPGLPGKQGVVG
PPGEKGETGSEGPMGPVGLPGKTGEAGIDGEDGKPGEKGSTGETGKQGPMGPAGPQGVQG
DKGDKGATGTKGMKGHTGHKGDQGPTGPVGPKGSQGDPGLTGGPGVKGNQGPPGVPGVKG
ERGEKGQRGATGAEGRPGQPGHEGVAGPMGARGLEGDPGNPGPPGPRGLPGPKVSDEKLR
EMCSAVVEVQLEEFMKEFLKRPAAIGAPGTPGPTGSPGPPGPAGAAGAAGIPGPMGPKGH
PGFFGLPGAPGNKGEAGPKGDKGDKGEDGVGNKGSPGAPGIPGAPGLPGVGKDGKNGERG
EAGSPGIPGPAGPRGPSGPPGLCDPSTCISRLPPLYMVSGKKSSSYKNP
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atggccctctgctgctctggtttgaagagaaagcaaaaatgccatccatcagtgtcagca
tgctctctcctatgtgtggctcttctttcccacctcgctgcacccactcttggacaatta
gacctgagccggctggatggcgataccgtctgtccaccaataagaaacggacaagatgac
cttccaggttttgatctgatcactcagttccagctggacgtgattcccctgaaaggtgtg
aggaaggtggacggctccacgcccctccaggtggcctaccgtctcgacagggaggccaac
tttcaaattccgaccatgcttaattttcctcggggcttcccggatgagtactccttcatg
accacctttcgtatgatcaagaacacggtgggcaaggtgtggaatgtctggcaaatagtg
gatgaagacggccacaagcaggctggactcaggctgaatggcgaccagcaggctcttgag
tactttttgatgggtgcagatggaaacctgcagactgtcacctttcctggcctatctgta
ctcttcaataccaagtggcacaaggtgatgattggcattgagcgtgagcaggtcacattg
tacgtggactgccagcctgtggatcagaaacccatcaagggcaaagggccaatcaacaca
gatggagacactctcattggcaggctggatgccgatcctgatgcctctgtggtgtttgag
ctccagtggatgttaattcactgcgatccaaagagagcccagagagagagctgcaatgag
cttcctgccaccgagatgtttgccaatgctgagcctgacaaatctcttcaaggtcctccg
ggtccccctggaccagagggccctcgaggggtcccaggagaaagtggcagggatggaaga
gatggtgttccagggactccagggattccaggtgctcctggcagcaaaggggagaagggg
gagatcggtcttcctggacagagaggcctccctggacttccaggatcttctggtcccatt
ggtccaatgggtcccagaggacctgtaggagaaagaggtctgcctggctttcctggacct
ccaggtccttctggtccatcaagcgaaggacctgctggtcctccagggaagccaggaacc
ccaggagatgaaggaaacattggacctgagggtccacctggacctagaggggggcctggc
attgcaggtcctcctggcccacctggtccaccagggcctgtgggaccacccggtgccaac
agtgagggaagtggggaagcttgtcctgccacgtgccctgctggacctcagggactgcat
gggctgccagggatgaagggacacaaaggattgccaggtgagcctggaagagatggagag
cctggagaaaaggggggtgttggagaacctggtcctcagggtccaccaggtcgcatggga
gatgatgggcaaagaggaccaatcggattcccaggaacccctggagagaaaggagatcga
ggtgctcctggttacaacggtgtctctggacccactggccctcctggagctcctggtgtg
gagggagcccgaggacgacaggggttgccagggcctaagggtgatgatggagctgtggga
cctaaaggacaaccaggtgtgaaaggagaaaaaggagaaattggtgagcctggcgaggat
gggctggatgggtttcctggtgctaatggtaccaagggagagcctggtgcaccaggagct
gttggaattagagggattgttggtattccagggttgccagggaagcagggagtagttgga
ccaccgggagaaaagggtgagaccggttctgaaggacccatggggccagttgggcttcct
ggaaaaactggggaggctggaatagatggagaggatggaaaaccaggagaaaaaggatcc
actggcgaaacaggaaagcaagggccaatggggcctgcaggtccacaaggagtacagggt
gacaaaggagataaaggagccactgggaccaaaggaatgaaaggtcatacggggcacaaa
ggtgatcagggaccaaccggacctgtgggacctaaaggaagtcagggagacccaggtctg
acaggaggcccaggtgtaaagggaaatcagggccctcctggtgtgcctggcgtcaaagga
gagcgtggagaaaaaggtcaaagaggagctacaggagctgaagggagacctggtcagcca
ggacatgaaggtgtggcaggtcccatgggagctcgaggactggagggagatccaggcaat
cctggaccaccaggtcccagaggtttacctggcccaaaagtgagtgatgaaaagcttcga
gaaatgtgctcggcagttgttgaagtacaattagaggagtttatgaaggaattcttaaag
aggcctgcagccattggtgctcctggtacacctggaccaacaggatctcctggaccccct
ggtccagctggagctgcaggggcggcaggcattccaggtccaatgggtcccaaaggccac
ccaggattctttggccttccaggtgcacctggaaataaaggtgaagctgggccaaaggga
gacaaaggagacaagggagaggacggtgtgggaaacaaaggaagtccaggagcaccaggt
attccaggtgcaccaggtcttcctggtgttggcaaagatggcaaaaatggagagcgtggt
gaagcaggaagtccaggcatcccaggacctgctggtccaaggggaccctcaggaccacct
ggtctttgcgacccatctacttgtataagcagacttccacctctctatatggtcagtgga
aagaaatcatcctcgtacaaaaacccatga
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