Girardinichthys multiradiatus (darkedged splitfin): 124880679
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Entry
124880679 CDS
T08099
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gmu00536
]
124880679
Glycosaminoglycan binding proteins [BR:
gmu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124880679
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
124880679
NCBI-ProteinID:
XP_047241889
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Position
14:21276588..21531613
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AA seq
679 aa
AA seq
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MEKEVKRHYRAAALNIISSLCSVASIAFCVHLSISAADIRSRVVGLESGTAERTFIQARG
YPMEDFNSLVQQRVDELLSQRSYENFAKIRNARQAAADCNCPPGPPGKRGRRGRDGEPGP
PGPPGPQGEKGDQGDQGPRMVFPKINHGFLSADQQLIKRRLIKGDQGQAGPPGPPGPPGP
PGPRGPPGDTGKDGPRGLPGLAGDPGHPGEIGLMGLEGPQGPKGSLGPPGIPGINGLKGD
VGIPGQDGIPGAKGEKGEQGEKGDMGEDGPKGDIGEKGDAGSSAAGIKGEPGEPGRSGLK
GEPGLPGLPGLPGIKGEPGFLGPQGEPGLPGLPGTKGEKGDHGPAGKGERGEIGPAGQKG
SQGESGMTGPKGSKGDAGDKGDLGSIGPRGPPGQKGDRGATEIIDYNGNIEEALQRITTI
TVTGPPGPPGPIGPPGFKGDRGLPGLPGLDGERGFKGSKGDMGMPGASGEKGGSGLPGLP
GVNGAKGDKGDPGLPGPQGPSITGPPGPPGPHGPPGPMGPHGFPGPKGEPGLHGLKGMRG
EPGHKGDRGPLGLPGASGLDGKPGIRGTDGPPGPAGLAGPKGDIGEKGAPGEPGPRGPYG
LPGAAGTPGLDGLPGLKGDKGDDGERGEKGEKGKKGKKGPKGEKGEQGAPGLDAPCPLGP
DGLPMPGCWQKGVTPWLVA
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggagaaggaagtgaagcgacactatcgcgcggcagcgctgaacatcatctcatcttta
tgttcagtggcgtccatcgctttctgcgtccatctgagcatcagcgcggcggacatcagg
agccgagttgtgggtttggagagcgggactgcggagcgcaccttcatccaggcccgcgga
taccccatggaggatttcaattctctggtgcagcagagagtggacgagttgctctctcag
cgctcttatgagaatttcgccaagatcaggaatgcaagacaggccgcagctgactgcaac
tgccccccaggacctcctggtaagagaggaaggagaggccgtgatggagaacctggacct
cctggtcctccaggtccacagggtgagaagggagatcaaggtgaccagggaccacggatg
gtcttcccaaagatcaatcatggctttctttccgctgaccagcagctcataaagcgtcgg
ctcattaagggagatcaaggccaggcaggaccacccgggcctccgggcccccctggccct
cctggaccaaggggccctccaggggacactggaaaggatggacccagaggtttaccaggt
ctagctggtgatccaggccacccaggagaaattggactcatgggacttgagggccctcaa
gggccaaagggttcactcgggcctcctggtatccctggtattaatggactgaagggagat
gttggcatcccaggacaggacggaatcccaggcgccaagggtgaaaagggagaacagggt
gaaaagggcgatatgggtgaagacggaccgaaaggtgacataggcgagaagggtgatgca
ggctcctctgcagcaggcatcaagggtgaaccaggagaacctggaaggagtggactgaag
ggagagccaggacttccagggctgcctggactcccagggataaagggtgagccaggattt
ctcggtccccagggagaaccagggcttccaggactcccaggaactaaaggcgagaaaggt
gaccacggaccagcaggaaagggagaaagaggagaaatcggacctgccgggcaaaagggt
tcgcaaggagagtctggtatgactggacctaaagggtcaaagggggatgccggagataaa
ggagatttgggatctattggcccaaggggtccaccagggcagaaaggagaccgaggagcc
actgaaatcatcgactacaacggaaacattgaagaggccctgcagaggattaccacaatt
acagtcacgggtcctcctgggccgcctggaccaataggacccccaggctttaagggagat
cgcggtttgcccggtcttcctggactcgatggagaaagaggctttaaaggttccaaagga
gacatgggaatgcccggggcgtcaggggagaaaggaggcagtggtttacctggcttacct
ggtgttaatggagcaaaaggagataaaggagatccaggacttccaggtccacagggtcca
tctataactggtcctccagggccaccaggaccccacgggcccccaggacctatgggaccc
catggcttccctggccctaagggagagcctggtttacatggactgaagggcatgagaggg
gaaccaggacacaaaggagaccgtggaccgctgggtctccctggagcctccggcttggac
ggcaagcccggaattaggggcacagacggacctccgggtccagcgggtctggccgggccg
aagggtgacattggtgagaaaggtgcaccaggtgagccaggaccacgaggaccgtatgga
ctaccaggagcagctggaacaccaggtttagatgggttgcctggattaaaaggagataaa
ggcgacgatggggagagaggagaaaagggggagaagggaaagaagggcaaaaaagggcct
aagggcgagaaaggagaacagggtgccccaggattagatgcaccctgcccattgggtcca
gatggattaccaatgcctggttgctggcagaagggagtcacaccatggcttgtagcctga
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