Glycine max (soybean): 100783935
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Entry
100783935 CDS
T01710
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
gmx
Glycine max (soybean)
Pathway
gmx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100783935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmx03019
]
100783935
Messenger RNA biogenesis [BR:
gmx03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100783935
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
100783935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
100783935
NCBI-ProteinID:
XP_006583551
UniProt:
A0A0R0J669
LinkDB
All DBs
Position
7:complement(10529831..10549901)
Genome browser
AA seq
2405 aa
AA seq
DB search
MTLLHSLPTMANFSSNQIRFLLSTLNEVNFDSIFHQLSQFAEFGTTGCILLLQTCLDHYG
YARRDMKDIQHEPILGAVIKYLLDKPNFSTVFSESMKNIEINESFLESFCNGLPLSLLEK
IIISLALSDSENPDVRLCGKFFCMARIEELCANPGSLSFHEQMHNVIMFLKQSEGFSKHV
DSFMQILSLVQFKDTPPFVLTPLLPDEMHEADFLRNMELFHDSGENDFDAILADIQKEMN
MGDIVKELGYGCTVDVSQCKEIFSLFLPLTENTLSKLLGAIACTRTGLEDSQNTYLTFRA
AHGYNVSELPPLNSWNIDVLIDTLMHLAPHTNWVRVIESLDHEGFFLPSEEAFSFLMSVY
KHACKEPFPLHAICGSIWKNTEGQLSFLKYAVSAPPEIFTFAHSGRQLAYVDAINGHKLQ
NGHANHAWLCLDLLDVLCQLAEKGHASIVRLIFDYPLKHCPEVLLLGLAHINTAYNLLQQ
EVSLIVFPMILKSAVGSGMILHLWHVNPNLVLRGFIDSQNNDADSIVRIVEICQELKILS
SVVEIIPYYYSIRLAAVASRKEFLDLEKWLSSNLTTYKEAFFEECLKFLKDTHFGGSQNL
SGKSFHQSGAVLSLYAEATATILKVLKSHTDLVASRQLSEELERLHISMIDTNPRLQNGG
TADSSTSDGYADDIEAEANSYFHQMFSDQLTINAMVQMLTRFKESSVKREKSIFECMIAN
LFEEYRFFPKYPERQLKIAAVLFGSVIKHQLVTHLSLGIALRYVLDALRKPADSKMFLFG
SLALEQFVDRLIEWPQYCNHILQISHLRSTHSEIVAFIEQALARISSGHSDVDGASHASV
ISNHHSAQASLGHVEQLSGSSVIQPGQQHLSMQLQQRRENPLDDRLKASVGSSTDVKPLL
SSLGQSSVLTPTDASSTNKLHSTVSTSSMLSSSSPGFVRPSRGTTSARFGSALNIETLVA
AAEKREIPIEAPGSEVQDKILFIINNVSAANIEAKAKEFTEILKEQYYPWFAQYMVMKRA
SIEPNFHDLYLKFLDKVNSKALNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWL
GKLTIGRNQVLRAREIDPKSLIMEAYEKGLMIAVIPFTSKVLEPCQSSLAYQPPNPWTMG
ILGLLAEIYSMPNLKMNLKFDIEVLFKNLCVDMKDVTPTSLLKDRKREIEGNPDFSNKDV
GASQSQIITDIKSGLVPPVNQVELPLEVTNPSNTGAHPHILSQYGGPLHISSGALMEDEK
VTPLGLSDQLPSAQGLLQANPAPAPFSISQLPTQIPNIGTHVIINQKLSGFGLQMHFQRA
VPIAMDRAIKEIVSSIVQRSVSIATQTTKELVLKDYAMESDETRILNAAHLMVASLAGSL
AHVTCKEPLRASISGQLRTSLQNLNIANEILEQAVQLVTNDNLDLGCAVIEQAATDKAIN
TIDTEIGQQLSLRRKHREGMGSTFFDANLYPQGSMGGVPEPLRPKPGQLSLSQQRVYEDF
VRLPWQNQSSQSSHSMSAGVAVQSGNTGLTGTNGSVSGQINPGYPVTTGYEGVSRPLDDM
TESNLAPHFSASSINIRAADSVSQHSMEKDSVASFPSAASTPELHAVDSSEVKESGTSPQ
PLVTSGAVERLGSSFLEPSLTTRDALDKFQIVAQKLEAMVSNDSRDGEIQGVISEVPEII
LRCVSRDEAALAVAQKVFRGLYDNASNNIHVSAHLAILTAIRDVCKLAVKELTSWVIYSE
EERKYNKEITVGLIRSELLNLTEYNVHMAKLIDGGRNKAATEFSISLLQTLVVEEPKVIS
ELHNLVDALAKLATKPGCPESLPQLLDMIKNPGALSSSNAGKEDKARQSRDNKGSGLLPA
NREEFNSVDSIEPDPAGFREQVSMLFTEWYRICELPGGYDTASTHFTLQLHQNGLLKGDD
LTDRFFRLLMELAVAHCLSTEMINSGSLQSQPLQTMSFLAIEIYAKLVFSILKGSNKLFL
LSKILAVTVRFIIKDAEEKKASFNPRPLFRLFINWLLDLGSLEPVTDGANLQILTAFANA
FHALQPLKVPAFSFAWLELISHRSFMPKMLTGNGQKGWPYIQRLLVDLFQFMEPFLRHAE
LGEPVRVLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRSMRLP
DPSTPNLKIDLLQEITQSPRILSEVDAALKAKQMKVDVDEYLKTRQQSSPFLSELKDKLL
LSPNEAASAGTRYNVPLINSLVLYVGMQAIHQLQGRTPHTQTSANAFPLAVFSVGAALDI
FQTLIVDLDTEGRYLFLNAIANQLRYPNTNTHYFSFILLYLFAESNQEVIQEQITRVLLE
RLIVNRPHPWGLLITFIELIKNPRYNFWNRSFIRCAPEIEKLFESVSRSCGGPKPVDDSM
VSGWV
NT seq
7218 nt
NT seq
+upstream
nt +downstream
nt
atgacacttcttcattccttgcccaccatggccaacttctcttccaaccagattcgcttt
ctcctcagcaccttgaacgaagtcaactttgactccattttccatcaactctctcagttt
gcggaatttggaactactgggtgcattttgctgcttcaaacttgcttggatcactatggc
tatgccagaagagatatgaaagacatccagcatgagccaattcttggggcagtcattaag
tacctcttggacaaaccaaacttcagcacagtgttttctgagtcgatgaagaatatagaa
attaatgaaagttttttagaaagtttttgcaatggattgccgttatctttattggaaaaa
attatcatcagtcttgctttatctgattctgagaatcccgatgtcaggctgtgtggcaaa
tttttttgcatggctcggattgaggaattgtgtgccaaccctggttctctgagtttccat
gagcaaatgcacaatgttatcatgttcctaaagcagtctgagggtttttccaagcatgtg
gattcctttatgcagatattgtcacttgtgcagttcaaagacacgccaccttttgtcttg
actccattgcttcctgatgagatgcatgaggctgattttttaaggaatatggagttgttc
catgacagtggagaaaatgattttgatgctattttggcagacatacagaaggaaatgaac
atgggtgatatcgtgaaggaactaggctatggatgcacggttgatgtctcacagtgcaag
gaaatattttcactctttttacctttaactgaaaatacactctctaaattacttggtgca
attgcttgcacccgtactgggctggaggacagccaaaacacatacttaacttttcgtgca
gcccatggatacaatgtgtctgagttgccaccactgaactcttggaatattgatgtcttg
attgatacacttatgcatcttgcacctcatactaattgggtacgcgttattgaaagcctt
gatcatgaagggttttttcttcctagtgaagaagcgttctcttttctcatgtctgtatat
aaacatgcctgtaaggaaccatttcctctccatgccatctgtgggtccatctggaagaat
actgagggtcagctgtctttccttaaatatgctgtatcagcaccaccggaaatttttacc
tttgcacactcgggaaggcagctggcatatgttgatgcaattaatggccacaagcttcaa
aatggacatgcaaatcatgcatggctgtgtcttgatcttttagatgtcctctgccagcta
gctgagaagggtcatgccagtattgttcgattaatctttgattatccccttaaacactgt
cctgaagtcttgcttcttgggctggcacatattaatactgcctacaacctcttgcagcag
gaagtatctctgattgtttttcccatgattttaaaaagtgctgtaggcagtgggatgatt
cttcacctttggcatgttaatcccaatctggtattgagagggtttattgattctcaaaac
aatgatgcagacagtattgtaagaattgttgaaatctgccaggagctaaagattctatca
tctgtggtggaaattattccctattattatagtataaggttagcagctgttgcatcaaga
aaagaatttcttgaccttgagaagtggttgagtagcaacttaactacatacaaggaagcc
ttttttgaggagtgcctcaagttcttaaaggatacccattttggtggatcgcagaacctt
tctggcaaatcatttcatcagtctggtgctgttctgagtctatatgccgaggcaactgct
accatcttgaaggttcttaaatctcatactgacttggttgcttctagacaactttctgag
gagttggagaggcttcatatatctatgatagatacaaatccaaggcttcagaatggtggg
acagctgattcatctacttctgatggatatgcggatgacattgaagctgaagcaaactct
tacttccatcaaatgttttctgatcagttaaccattaatgcaatggtacagatgcttaca
cgattcaaggaatcttcagtgaagagggagaaatcaatttttgaatgcatgattgcaaac
ttgtttgaggagtatagatttttcccaaagtatcctgaaagacaactcaaaattgctgca
gttctctttggttctgtgatcaagcatcagcttgtaactcatctatctttggggattgct
cttcgttatgttcttgatgcattgcgcaagcctgcagattctaaaatgtttttgtttgga
agtctggcattggagcagtttgtggatcgtcttattgagtggcctcagtattgcaatcat
attcttcaaatttcccatttgcgcagtacacattcagaaatagttgctttcattgagcag
gctcttgccaggatttcctctggtcattcagatgttgatggggcgagtcatgcttctgtt
attagtaaccatcattctgcacaggcttcattagggcatgtagagcagctcagtggctct
agcgtcatacaacctgggcaacaacatttgtcaatgcagcttcaacaacgacgtgaaaat
ccgttggatgatcgtctcaaagcttctgttggttcatctacggatgtaaaaccattgtta
tcttctctagggcaatcttcagtactaacacctactgatgcttctagtaccaataagtta
catagcacagtcagcacgtcatcaatgctatcttcgtcttctcctggttttgttcgtcct
tcccgtggaactacttctgccaggtttggatctgccttgaacattgaaactttggttgct
gctgctgagaaaagagaaattcctattgaggctccagggtcagaggttcaggacaagata
ttatttataattaataatgtttctgctgctaatattgaagctaaagcaaaagagttcact
gaaattttgaaagagcagtactatccttggtttgcacagtatatggttatgaaaagagcg
agcattgagccaaatttccatgacttgtacctgaaattcctggataaagttaattcaaag
gctttgaacaaagagattgtccaggcaacttatgaaaattgcaaggttcttttaggatct
gagctcataaaatcaagttcagaggaacgttctttgcttaaaaatttggggagctggctt
ggaaagttaacaattggccggaatcaggttttgagagctcgtgaaatagacccaaagtct
ttgattatggaggcatatgagaaggggctaatgattgctgttattccatttacgtcaaag
gtccttgaaccatgccaaagcagtcttgcatatcaacctcctaatccttggactatgggc
attttgggattgcttgctgagatttattcaatgccaaacttgaaaatgaacctcaaattt
gacatagaggttttattcaaaaatctgtgtgttgatatgaaggatgtcacaccaacttct
ctcctgaaggatagaaaaagagaaattgaaggaaatcctgatttctctaataaagatgtt
ggggcatctcaatcacaaataattactgatataaaatctggccttgtacctccggtaaat
caagtggaattaccacttgaagtcaccaatccatccaacacaggggctcatccacatata
ctgtctcagtatggtggtcctcttcatatttcctcgggagcattgatggaagatgaaaag
gttacacctctgggattgtctgatcaacttccctctgctcaaggactgttacaagcaaat
cctgccccagcacctttttctattagccagcttccaacacagatacctaatattgggact
cacgttattatcaatcaaaagctcagtggttttgggctgcaaatgcattttcagagagcg
gtacccattgcaatggacagagctatcaaagagatagtgtctagtattgtgcagcgtagt
gtttccatagcaacacaaacaaccaaggagcttgttttaaaggactatgccatggaatct
gatgagacacgcatattaaatgcggcacacttgatggttgctagtctggctggaagtttg
gctcatgttacgtgcaaagaaccattacgggcatcaatatctggtcaactgaggacttca
cttcagaacttaaatattgctaatgaaattttggaacaagctgtgcaacttgtcaccaat
gataatcttgatctaggctgtgcagtcattgaacaggctgctactgacaaggcaataaac
accatcgatacagagattggtcaacaactctctttgagaaggaagcatcgagaaggtatg
ggttctacattttttgatgcaaatttgtatccacaaggttctatgggtggtgttccagag
cctcttcgccccaagcctggtcagttgtctctctcacaacaacgtgtctatgaggacttc
gttcggcttccctggcaaaaccagtctagccagagctcacattctatgtctgctggtgtc
gctgttcaatctggcaatactggtcttactggcactaatggttctgtatcagggcagatt
aaccctggataccctgtgaccacagggtatgaaggagtatctagaccattagatgatatg
acagaatctaatttggctccacattttagtgcttcctcgattaacattagagcagctgat
agtgtttcccagcacagtatggagaaagactctgttgcctcatttccttcggctgcttcc
acccctgaattgcatgcagtggattcttctgaagtgaaagaatctggaacttctccacag
ccactagttacatcaggtgctgtggagcgccttggaagtagttttttggagccttctctc
acaacaagagatgccctagataaattccaaattgttgcgcaaaagttggaagctatggtc
agcaatgattccagggatggagaaatacagggtgtcatttctgaggttcctgagatcata
cttagatgtgttagtcgagatgaggcagctttagctgtggctcaaaaggttttcaggggt
ttgtatgataatgcatcaaacaatattcatgtctctgctcatcttgctatcctgactgcc
attcgtgatgtttgcaagcttgctgtcaaggagcttactagttgggtaatttactcggaa
gaagaaaggaaatataacaaagaaattactgttggcctcatccgtagtgaattgctaaat
cttactgagtacaatgttcatatggccaaacttattgatggaggaaggaacaaggctgca
accgaattttccatttcccttcttcaaaccctggttgtcgaggaacctaaagttatttca
gaacttcacaatcttgttgatgctttggcaaagcttgctacaaagcctggatgccctgag
tcattaccacagcttcttgacatgatcaagaatcctggtgctctatcttctagtaatgct
ggaaaggaggataaggcaagacaatcaagagacaataagggttctggtctgttacctgca
aacagggaagagttcaacagcgtcgattctattgaaccagatcctgctgggttccgggag
caggtttccatgttgtttacagaatggtataggatatgtgaacttcctggtggctatgat
acagcttctacccactttacattacaattgcatcagaatgggctgcttaagggggatgat
cttacagatcgctttttccgactattgatggaactagctgttgcacattgcttatccact
gagatgattaattctgggtcactacagtctcaaccgctgcagacaatgtcatttcttgca
attgaaatttatgcaaagcttgtcttctcaatcttgaagggatcaaacaaactctttctt
ctttccaagattctggcagttactgtcagattcattataaaagatgcagaggagaagaag
gcctcttttaatccaaggccacttttcagattattcatcaactggcttctagatcttggt
tcacttgagcctgttactgatggtgcaaatcttcagattttaactgcttttgccaatgca
tttcatgctttgcagcccctcaaagttcctgcattcagttttgcatggcttgagttgatt
agtcacaggagcttcatgcctaaaatgttgactggtaatggtcaaaaaggttggccttat
atccaaaggttgcttgtagatctgttccaatttatggagccttttctgaggcatgctgaa
cttggagaaccggttcgtgtcctctataaaggaacacttagggtgctcttagtgctactt
catgacttccctgagtttctatgtgactatcactttaccttttgtgatgttattcctcca
agttgcatacagatgaggaatatcattctaagtgcatttccacgtagtatgaggctgcca
gatccatctactcctaatctgaagattgatttgcttcaagaaataacccaatcgcctcgc
attctttcggaggttgatgcagcactcaaagcaaagcagatgaaggttgatgtagatgaa
taccttaagacaaggcaacagagttcgccgtttttatctgaactgaaggataagctgctt
ctctcacccaatgaagcagcttctgctgggactcgatataatgtgccgttaattaactca
cttgtgctatatgttggaatgcaggcaatccatcagcttcagggacgaactccccatact
caaacatcagcaaatgctttccccttagccgtattttctgttggtgctgcattggatatt
ttccagaccctaattgtggacttggatactgaagggcgctaccttttcctaaatgctatt
gccaaccaactgcgttatcctaatactaatacacactacttttccttcatccttctgtac
ttgtttgctgaatcaaaccaggaagttatccaagaacaaattactagagtcttgttagaa
cgcctaattgttaaccgtcctcatccctggggtctcctcattacttttattgagctgatc
aagaatcctaggtacaatttctggaaccggagtttcataagatgtgcaccggagattgaa
aaactttttgaatcagtgtcaagatcttgtggaggtccaaaaccagtggatgatagcatg
gtttcgggttgggtctga
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integrated database retrieval system
