Glycine max (soybean): 100804203
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Entry
100804203 CDS
T01710
Name
(RefSeq) CHD3-type chromatin-remodeling factor PICKLE isoform X1
KO
K11643
chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-]
Organism
gmx
Glycine max (soybean)
Pathway
gmx03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
100804203
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gmx03036
]
100804203
Chromosome and associated proteins [BR:
gmx03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
100804203
Chromatin remodeling factors
NuRD complex
100804203
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDII_SANT-like
Chromo
DUF1087
Helicase_C
HDA2-3
ResIII
PHD
CHDCT2
DEAD
PHD_4
zf-HC5HC2H
Myb_DNA-binding
IRK_N
C1_2
Motif
Other DBs
NCBI-GeneID:
100804203
NCBI-ProteinID:
XP_014632790
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All DBs
Position
6:4770090..4787883
Genome browser
AA seq
1441 aa
AA seq
DB search
MSSLVERLRVRSDRRPIYNLDDSDDDADLLPRNSGTTQEKIERIERSDAKENLCQACGEN
ENLVSCGTCTYAYHPKCLLPPLKGPLPDNWRCPECVSPLNDIDKILDCEMRPTTAADNDA
TKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKTHPRLKTKVNNFHQKMASVNTS
DEDFVAIRPEWTTVDRILACRGDDDEREYLVKWKELPYDECYWEFESDISAFQPEIERFN
RLRSRSSKFSSGKQKNSVKDDAELKKQQKEFQHYEQSPEFLSGGTLHPYQLEGLNFLRFS
WSKQTHVILADEMGLGKTIQSIAFLASLFKEGVSPHLVVAPLSTLRNWEREFATWAPHMN
VLMYVGSAQARSVIREYEFYFPKKQKKIKKKKSGHLISESKQDRIKFDVLLTSYEMINFD
TASLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHF
LDAGKFGSLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRIEL
SSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIDDAKEAF
KQLLESSGKLQLLDKMMVKLREQGHRVLIYSQFQHMLDLLEDYCAYKNWQYERIDGKVGG
AERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHR
LGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKE
LFADENDEAGKSRQIHYDAAAIDRLLDRDQVGDEEATLDDEDEDGFLKAFKVANFEYVDE
AEAAAEEAAQKRAMETLNSSERTHFWEELLRDKYQEHKVEEFNALGKGKRNRKSMVSVEE
DDLAGLEDVSSDGEDDNYEAELTDGDSNSTGITTARRPYKKKARTADSTEPLPLMEGEGK
AFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFTSRMKQKTYEEIKDYGTLFLSHIAEDIT
DSATFTDGVPKEGLRIQDVLVRIAVLLLIRDKVKFVSQHPQTPLFSDDILLRYPGLKGAK
IWKEEHDYVLLRAVLKHGYGRWQAIVDDKDLKIQEVICQELNLSFINLPVPGQVSSQAQN
GANLTNAEVSNNQSKENGGSDIAADGAQGSGDARNQAQLYQDSSILYHFRDMQRRQVEFI
KKRVLLLEKGLNAEYQKEYFGDPKANEVTNEELKSETKATNFPGDKLGDTDTQMIDQLPQ
VQTIASEEISAECDSDPTRLELVRLYNEMCKAVEEDSMDLVQTSLAREPAELNVVKNFPP
LETLCEDINKILTPTQEQPIAEMPISNSDNKSEAMSHGENLGSKSPPISQDCKPKDSEDN
ENKDMKIESESIKESCSSLLEEKNETPTLPDKEESKTEMDETMNDAELNENPEKSDAVLE
G
NT seq
4326 nt
NT seq
+upstream
nt +downstream
nt
atgagtagcttggtggagaggcttcgtgtaagatcagatcgcaggcctatttataatctt
gatgattcagatgacgatgctgatctattgccaagaaactcagggacaactcaggaaaag
atagagaggatagagagaagtgatgcgaaagagaatttatgtcaagcctgtggagaaaat
gaaaatcttgtgagctgtggaacgtgcacatatgcttaccatcctaagtgtttacttcca
ccccttaaaggtccccttccagacaattggaggtgccctgaatgtgttagcccacttaat
gatattgataagatattagattgtgagatgcggcctactactgctgctgacaatgatgcc
acaaaattagggtcaaagcaaatttttgtcaaacaatacctcgttaagtggaagggccta
tcctatttgcattgcacgtgggtgccggagaaagagtttctgaaagcatttaagactcat
cctcgtctaaagaccaaggtgaataactttcatcaaaaaatggcatctgtcaatacttct
gatgaagactttgttgccattcgacccgaatggactacagttgatcgaatacttgcctgc
aggggtgatgatgatgagagggaatatcttgtgaagtggaaggagcttccatatgatgaa
tgctattgggagtttgagtcagatatttctgcatttcagccagaaatcgaaagattcaat
agattgcggtctagatccagcaagttttcctctggtaaacaaaaaaacagtgttaaggat
gatgctgaattgaagaaacagcagaaagaatttcaacattatgaacaaagccctgagttt
ctttcaggtggtacattacatccatatcagcttgaaggcttgaacttcttacgattctct
tggtccaagcagactcatgttatacttgctgatgaaatgggacttggaaaaaccatacaa
agtattgctttcttagcatcactttttaaagagggtgtctctccacatctggtggttgct
ccactttcaactttgcgaaactgggaacgtgaattcgccacatgggcacctcatatgaat
gtgctaatgtatgttggatctgcccaagctcgtagtgttataagagagtatgaattttac
tttccaaagaaacagaagaagatcaagaaaaagaaatctggtcatttaattagtgaaagc
aagcaagacaggattaagtttgatgttcttttgacatcatatgaaatgatcaactttgac
acagcatcactaaaacctataaaatgggagtgcatgatagttgatgaaggtcaccgtctc
aaaaataaggattcaaaattattttcttcattgaagcaatattctagcagacatcgtgtt
ctcttgacaggaactcctcttcagaacaacttggatgaactttttatgcttatgcacttc
cttgatgctgggaagtttggaagtttagaggagtttcaggaagagtttaaggatatcaat
caagaggaacagatttcaaggcttcataaaatgttggccccacatctcctgcgaagagtg
aagaaagatgtcatgaaggagctacctcctaaaaaggagcttattctacgtattgaattg
agcagcaaacagaaagaatattataaggcaattttgactcgcaattatcagatattaact
cgtcgtggtggtgcacagatttctcttatcaatgttgttatggaactgcgtaagctctgt
tgtcatccttacatgttagaaggagttgaaccagatattgatgacgcaaaagaagcattc
aaacagctgctggaatcatcggggaagttgcaattgctggacaagatgatggtgaagctt
agagagcaaggacatagagtcctcatatattcccaatttcagcacatgctggacttgctt
gaagattactgtgcgtacaagaattggcagtatgaaaggattgatggcaaggttggtgga
gctgaaagacaagttcggatagatcgattcaacgccaaaaattcttcaagattttgcttt
cttctttctactagagctggggggctggggataaaccttgcaactgctgacacagttatt
atatatgatagtgattggaatcctcatgctgatttacaagcaatggctagagctcatcga
cttggacaaactaacaaggtgttaatttataggcttataacacgaggaactattgaagaa
aggatgatgcagatgactaagaagaaaatggttttagaacacctagttgtagggaggcta
aaggctcaaaatatcaaccaggaagagttggatgacatcataagatatggctcaaaggag
ttatttgcagatgagaatgatgaagccggcaaatcccgccaaattcattatgatgctgct
gctattgatagattgctggatcgtgatcaagttggagatgaagaggccactttggatgat
gaagatgaagatggatttctgaaggcctttaaggttgcaaattttgagtatgttgatgag
gccgaggctgcagcagaggaggcagcacaaaaaagagcaatggagacacttaacagttca
gaaaggacacatttctgggaggagttgttaagagacaagtatcaagagcataaagttgag
gagtttaatgccttgggcaaggggaagcgaaaccggaagtcgatggtttccgtggaggag
gatgaccttgctggtctggaagatgtaagctctgatggtgaagatgacaattatgaagca
gagcttactgatggtgattcaaattccactggaattacaactgctagaaggccttataaa
aaaaaagcacgtacagcagatagcacagagccacttcctctgatggaaggtgaaggaaaa
gcattcagagtccttggttttaatcaaaatcagagggctgcatttgtgcaaattttgatg
aggtttggggttggtgattttgattggaaggagtttacttcccgcatgaaacagaagact
tatgaagaaatcaaagactatggaacccttttcttgtctcatattgctgaagatataact
gattccgctacattcacagatggtgttccaaaagaaggactccgaatccaagatgtactt
gttaggattgcagtcctgctcttgataagggacaaggtgaagtttgtgtcacaacatcct
caaactccattgttttcagatgatatattattacggtatccaggtttgaagggtgcaaag
atatggaaggaggagcatgattatgttttgctacgtgcggttttgaagcatgggtatgga
aggtggcaagctattgttgatgataaggatctgaagattcaggaggtcatatgccaggag
ttgaatctttcctttataaacttaccagttccaggacaagttagttctcaggcacaaaat
ggagcaaatttgacaaatgcagaagtttccaacaatcaatccaaggaaaatggtgggagt
gatattgcagctgatggtgcacaaggttctggtgatgctaggaaccaagcacagttatat
caagactcgtccatattatatcattttagagacatgcagagaagacaggttgagtttata
aaaaaaagagttcttctcttggaaaaagggctcaatgctgagtaccagaaagaatacttt
ggtgatccaaaagcaaatgaagtaacaaatgaagaacttaaaagtgaaaccaaggctact
aattttccaggtgataaattaggggacactgacacccaaatgattgatcaacttccgcaa
gtacaaacaatagcttcagaagaaatttcagctgaatgtgatagtgatcccactcgattg
gagttagttcgcctttacaacgagatgtgcaaggcagtggaggaagactccatggattta
gttcaaacttctttggcaagagaaccggcagagctcaatgtagtgaagaatttccctcca
ctagaaactctttgcgaagacattaacaaaattctaacacccacacaagaacaacctatt
gcagaaatgccaatatcgaattcagataacaaatcagaggctatgtcacatggtgaaaat
ttgggctccaaatcaccgccaatctctcaagactgcaagcctaaagattcagaagacaat
gagaataaagatatgaaaatagaatctgaatctataaaagaaagctgttcaagcctgtta
gaagagaagaatgaaacaccgactcttccggataaagaggaaagtaaaacagaaatggat
gaaactatgaatgatgctgagttgaatgaaaacccggagaaatctgacgctgtattggaa
ggttaa
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