KEGG   GENOME: Dinoroseobacter shibae
Entry
T00612            Complete  Genome                                 
Org code
dsh
Name
Dinoroseobacter shibae DFL 12 = DSM 16493
Category
Type strain
Annotation
yes
Taxonomy
TAX:398580
  Lineage
Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Dinoroseobacter
Brite
KEGG organisms [BR:br08601]
KEGG organisms in the NCBI taxonomy [BR:br08610]
KEGG organisms in taxonomic ranks [BR:br08611]
Data source
GenBank (Assembly: GCA_000018145.1 Complete Genome)
BioProject: 17417
Original DB
JGI
RoseoBase
Keywords
Denitrification
Comment
Symbiosis with dinoflagellates.
Synthesizes the vitamins B1 and B12 for which its host is auxotrophic.
Capable of growing anaerobically using the alternative electron acceptors nitrate and dimethylsulfoxide.
Capable of performing light-driven ATP synthesis using bacteriochlorophyll a in the presence of oxygen.
Has the large number of extrachromosomal replicons.
Synthesizes novel acylated homoserine lactone (AHL) compounds.
Isolated from cells of Prorocentrum lima (benthic dinoflagellate).
Chromosome
Circular
  Sequence
GB:CP000830
  Length
3789584
Plasmid
pDSHI01; Circular
  Sequence
GB:CP000831
  Length
190506
Plasmid
pDSHI02; Circular
  Sequence
GB:CP000832
  Length
152970
Plasmid
pDSHI03; Circular
  Sequence
GB:CP000833
  Length
126304
Plasmid
pDSHI04; Circular
  Sequence
GB:CP000834
  Length
86208
Plasmid
pDSHI05; Circular
  Sequence
GB:CP000835
  Length
72296
Statistics
Number of nucleotides:       4417868
Number of protein genes:        4194
Number of RNA genes:              50
Created
2007
Reference
PMID:19741735
  Authors
Wagner-Dobler I, Ballhausen B, Berger M, Brinkhoff T, Buchholz I, Bunk B, Cypionka H, Daniel R, Drepper T, Gerdts G, et al.
  Title
The complete genome sequence of the algal symbiont Dinoroseobacter shibae: a hitchhiker's guide to life in the sea.
  Journal
ISME J 4:61-77 (2010)
DOI:10.1038/ismej.2009.94
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