Geomonas diazotrophica: KP003_15300
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Entry
KP003_15300 CDS
T07937
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
gnt
Geomonas diazotrophica
Pathway
gnt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gnt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KP003_15300 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gnt03019
]
KP003_15300 (rny)
Messenger RNA biogenesis [BR:
gnt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KP003_15300 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
HDOD
KH_1
KH_PNO1_2nd
KH_KhpA-B
KH_2
KH_NusA_2nd
Ribosomal_S18
Motif
Other DBs
NCBI-ProteinID:
QXE85723
LinkDB
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Position
complement(3524163..3525764)
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AA seq
533 aa
AA seq
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MKIDITIAILLVLVAAAIGYVIGNVLRKKLSDSLVTNAETLAAKMIEDAKRQAEVVAMEA
AVQAKDVVYQAKEELERQFEQESREKRRDLQTLEKRLQQKEENLDKKTNLFDQRDADFLK
REQALAVREQSLVNKEQGLAQKEEKLDALVGEQKAKLEQIAGMTAAEAKKFLMDSMEDEA
KLDVAKLIKVMEEEARETADKKAKEILALAMQRYAGEYVAERSVSVVTLPSDEMKGRIIG
REGRNIRALEAATGIDLIIDDTPEAVILSGFNPVRREVAKLSLQKLIADGRIHPGRIEEV
VAKSQEEIEQAMKEAGEQAAFDLGVHGIHPEILKLIGRLKYRTSYSQNVYQHSLEVAFLC
GIMAAELGINVKQAKRAGLLHDLGKAVDHEIEGSHAVIGADIAKKYGESPKIVHAIMAHH
EDEKPATVLAVLVQAADALSGARPGARREMMETYVKRLDDLERIATSFDGVLTSFAIQAG
REIRVMVSSEQVTDDRALVLAKDIAKKIETEMTYPGQIKVNVIRETRATEYAR
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaatcgacataactattgccatattgctggtgcttgtcgcggccgccatcgggtac
gtgataggcaacgtcctgcgcaagaaactatcggattctttggtgaccaacgcggaaacg
cttgctgccaagatgatcgaggatgccaagcgtcaggccgaggtcgtggccatggaggcc
gcggttcaggccaaagacgtggtgtaccaggcaaaggaagagctggaaaggcaatttgaa
caagagagccgcgagaagcgtcgcgacctgcagactctcgagaagaggctgcagcaaaaa
gaagagaatctcgacaagaagaccaatctgttcgaccagcgtgacgccgacttcctgaaa
agagagcaggcgcttgccgtacgcgagcagtccctggtgaataaggaacaggggcttgcc
cagaaagaagagaaactggacgccctggtgggcgagcagaaggcgaagcttgagcagatt
gccggcatgactgccgccgaggccaagaagttcctgatggactccatggaagacgaagcg
aagctcgatgtcgccaagctgatcaaggtgatggaggaagaggccagggaaaccgcggac
aagaaggccaaggaaattctggctcttgccatgcagcgttacgccggcgagtacgttgcc
gagcgcagcgtttccgtggtgaccctcccctccgacgagatgaaggggcgcatcatcggc
cgcgaagggcgcaacatcagggctctcgaggcagctaccggcatcgacctgatcatcgac
gacacccccgaggcggtcatcctttccggcttcaacccggtccggagggaagttgccaag
ctgtcgctgcagaaactcatcgccgacggcaggattcaccccggccgcattgaggaagtc
gtagcgaaatcccaggaggagatcgagcaggccatgaaggaggcaggtgagcaggccgcc
tttgacttgggcgtgcacggcatccacccggagatcctgaagctcatcgggcgcctgaag
taccgcacctcctacagccagaacgtttaccagcattcgctggaagtcgctttcctttgc
ggcatcatggccgccgagctcggcatcaatgtgaagcaggccaagagggccggcctcctg
cacgacctcggcaaggccgtggaccacgagatcgaaggttcccacgcagtcatcggcgcg
gacatcgccaagaaatacggcgagtctccgaagatcgtccatgccatcatggcgcaccac
gaggacgagaaaccggcgacggtccttgccgtcctggtacaggccgccgatgcgctctcc
ggcgctcgtccgggtgcccgccgcgagatgatggaaacctacgtgaagcgcctggacgac
ctggaaaggatcgccacctccttcgacggagtcctcacttccttcgccatccaggccggc
cgggagatccgtgtcatggtatccagcgagcaggtgaccgatgaccgcgcactggttctg
gccaaggatatcgccaagaagatcgaaaccgagatgacctaccctggccagatcaaggtc
aacgtgatcagggaaaccagggcaaccgaatatgcccgttaa
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