KEGG   Geomonas diazotrophica: KP003_15300
Entry
KP003_15300       CDS       T07937                                 
Symbol
rny
Name
(GenBank) ribonuclease Y
  KO
K18682  ribonucrease Y [EC:3.1.-.-]
Organism
gnt  Geomonas diazotrophica
Pathway
gnt03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gnt00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    KP003_15300 (rny)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gnt03019]
    KP003_15300 (rny)
Messenger RNA biogenesis [BR:gnt03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     KP003_15300 (rny)
SSDB
Motif
Pfam: RNase_Y_N HD HDOD KH_1 KH_PNO1_2nd KH_KhpA-B KH_2 KH_NusA_2nd Ribosomal_S18
Other DBs
NCBI-ProteinID: QXE85723
LinkDB
Position
complement(3524163..3525764)
AA seq 533 aa
MKIDITIAILLVLVAAAIGYVIGNVLRKKLSDSLVTNAETLAAKMIEDAKRQAEVVAMEA
AVQAKDVVYQAKEELERQFEQESREKRRDLQTLEKRLQQKEENLDKKTNLFDQRDADFLK
REQALAVREQSLVNKEQGLAQKEEKLDALVGEQKAKLEQIAGMTAAEAKKFLMDSMEDEA
KLDVAKLIKVMEEEARETADKKAKEILALAMQRYAGEYVAERSVSVVTLPSDEMKGRIIG
REGRNIRALEAATGIDLIIDDTPEAVILSGFNPVRREVAKLSLQKLIADGRIHPGRIEEV
VAKSQEEIEQAMKEAGEQAAFDLGVHGIHPEILKLIGRLKYRTSYSQNVYQHSLEVAFLC
GIMAAELGINVKQAKRAGLLHDLGKAVDHEIEGSHAVIGADIAKKYGESPKIVHAIMAHH
EDEKPATVLAVLVQAADALSGARPGARREMMETYVKRLDDLERIATSFDGVLTSFAIQAG
REIRVMVSSEQVTDDRALVLAKDIAKKIETEMTYPGQIKVNVIRETRATEYAR
NT seq 1602 nt   +upstreamnt  +downstreamnt
gtgaaaatcgacataactattgccatattgctggtgcttgtcgcggccgccatcgggtac
gtgataggcaacgtcctgcgcaagaaactatcggattctttggtgaccaacgcggaaacg
cttgctgccaagatgatcgaggatgccaagcgtcaggccgaggtcgtggccatggaggcc
gcggttcaggccaaagacgtggtgtaccaggcaaaggaagagctggaaaggcaatttgaa
caagagagccgcgagaagcgtcgcgacctgcagactctcgagaagaggctgcagcaaaaa
gaagagaatctcgacaagaagaccaatctgttcgaccagcgtgacgccgacttcctgaaa
agagagcaggcgcttgccgtacgcgagcagtccctggtgaataaggaacaggggcttgcc
cagaaagaagagaaactggacgccctggtgggcgagcagaaggcgaagcttgagcagatt
gccggcatgactgccgccgaggccaagaagttcctgatggactccatggaagacgaagcg
aagctcgatgtcgccaagctgatcaaggtgatggaggaagaggccagggaaaccgcggac
aagaaggccaaggaaattctggctcttgccatgcagcgttacgccggcgagtacgttgcc
gagcgcagcgtttccgtggtgaccctcccctccgacgagatgaaggggcgcatcatcggc
cgcgaagggcgcaacatcagggctctcgaggcagctaccggcatcgacctgatcatcgac
gacacccccgaggcggtcatcctttccggcttcaacccggtccggagggaagttgccaag
ctgtcgctgcagaaactcatcgccgacggcaggattcaccccggccgcattgaggaagtc
gtagcgaaatcccaggaggagatcgagcaggccatgaaggaggcaggtgagcaggccgcc
tttgacttgggcgtgcacggcatccacccggagatcctgaagctcatcgggcgcctgaag
taccgcacctcctacagccagaacgtttaccagcattcgctggaagtcgctttcctttgc
ggcatcatggccgccgagctcggcatcaatgtgaagcaggccaagagggccggcctcctg
cacgacctcggcaaggccgtggaccacgagatcgaaggttcccacgcagtcatcggcgcg
gacatcgccaagaaatacggcgagtctccgaagatcgtccatgccatcatggcgcaccac
gaggacgagaaaccggcgacggtccttgccgtcctggtacaggccgccgatgcgctctcc
ggcgctcgtccgggtgcccgccgcgagatgatggaaacctacgtgaagcgcctggacgac
ctggaaaggatcgccacctccttcgacggagtcctcacttccttcgccatccaggccggc
cgggagatccgtgtcatggtatccagcgagcaggtgaccgatgaccgcgcactggttctg
gccaaggatatcgccaagaagatcgaaaccgagatgacctaccctggccagatcaaggtc
aacgtgatcagggaaaccagggcaaccgaatatgcccgttaa

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