Geodermatophilus obscurus: Gobs_4519
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Entry
Gobs_4519 CDS
T01163
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
gob
Geodermatophilus obscurus
Pathway
gob03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gob00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Gobs_4519
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gob03021
]
Gobs_4519
03400 DNA repair and recombination proteins [BR:
gob03400
]
Gobs_4519
Enzymes [BR:
gob01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Gobs_4519
Transcription machinery [BR:
gob03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Gobs_4519
DNA repair and recombination proteins [BR:
gob03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Gobs_4519
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ADB77069
UniProt:
D2SHB5
LinkDB
All DBs
Position
complement(4738225..4741734)
Genome browser
AA seq
1169 aa
AA seq
DB search
MAGSRPTSINPRTTDSGPYGQQSQAPQAGPRTGEADQQKIPGAPLRVSFAKISEPLEVPD
LLALQTASFDWLIGSPTWRATLSPEEQADAVGGLAEILEEISPIEDFSGSMSLSFSNPRF
EDVKASLEECKDKDMTYAAPLFVTAEFMNNTTGEIKSQTVFMGDFPIMTNKGTFVINGTE
RVVVSQLVRSPGVYFDKTLDKTSDKDVFSAKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQ
PVTVLLKALGWTEDRIREHFQWSPTVLATLEKDHIAGQDEALLDIYRKLRPGEPPTRESA
QALLENLFFNGKRYDLAKVGRYKVNKKLGVDVPQATLTLTEDDIVATIEYVVRLHAGEPD
HGVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVV
ASIKEFFGTSQLSQFMDQTNPLAGLTHKRRLSALGPGGLSRERAGMEVRDVHPSHYGRMC
PIETPEGPNIGLIGSLSAYGRVNAFGFIETPYRRVQNGVVTDTIDYLTADEEDRFVVAQA
NSPLDAQGRFAEDRVLVRTKGGEVDYLVPENVDYMDVSPRQMTSVATAMIPFLEHDDANR
ALMGANMQRQAVPLLRSEAPLVGTGMELRAAVDAGDVVVAEKAGVVEDSTADYVTVMADD
GTRQTYRLLKFRRSNQGTSINQTPVVDEGQRVEVGQVIADGPCTDEGEMALGKNLLVAFM
PWEGHNYEDAIILSQRLVQDDVLSSIHIEEFEVDARDTKLGAEEITRDIPNVSEEVLADL
DERGIIRIGAEVVPGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVKHGES
GKVIGVRVFSREDGDELPAGVNELIRVYVAQMRKISDGDKLAGRHGNKGVIAKILPQEDM
PFLEDGTPVDIVLNPLGVPGRMNVGQVLETHLGWVAKSGWQVEGTPEWAVNLPDPARAAG
PGTRTATPVFDGAREEEIVGLLGSTIPNRDGNRMVQPTGKARLFDGRSGEPFPEAISVGY
VYILKLLHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYALQE
LLTIKSDDILGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSGDGQAIEL
RDTDDEVFRAAEELGIDLSRREPSSVEDV
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggctctcgccccaccagcatcaacccccgcaccaccgactccgggccctacggc
cagcagtcacaggcaccccaggccggcccccgcaccggtgaggccgaccagcagaagatc
cccggcgcgccgctgcgcgtctcgttcgccaagatctccgagccgctcgaggtgccagac
ctcctggcgctgcagaccgcgtcgttcgactggctcatcggcagccccacgtggcgggcc
accctctcgccggaggagcaggccgacgccgtgggcgggctggccgagatcctcgaggag
atttccccgatcgaggacttcagtggctcgatgtcgctgtccttctccaacccgcgcttc
gaggacgtcaaggcgtccctcgaggagtgcaaggacaaggacatgacctacgcggcgccg
ctgttcgtcaccgccgagttcatgaacaacaccaccggtgagatcaagagccagacggtg
ttcatgggcgacttcccgatcatgacgaacaagggcacgttcgtcatcaacgggaccgag
cgcgtcgtcgtctcgcagctggtccgcagcccgggcgtctacttcgacaagaccctggac
aagacctccgacaaggacgtcttcagcgccaaggtcatccccagccgtggtgcgtggctg
gagttcgacgtcgacaagcgcgacaccgtcggcgtccgcatcgaccgcaagcgccggcag
ccggtcaccgtgctgctcaaggcgctgggctggaccgaggaccggatccgcgagcacttc
cagtggtcgcccacggtgctggccaccctcgagaaggaccacatcgccggtcaggacgag
gcgctgctggacatctaccgcaagctgcggccgggcgagccgccgacgcgggagagcgcc
caggcgctgctggagaacctgttcttcaacgggaagcgctacgacctggccaaggtcggc
cgctacaaggtcaacaagaagctcggcgtcgacgtgccgcaggccaccctgacgctgacc
gaggacgacatcgtcgccaccatcgagtacgtggtgcgcctgcacgcgggcgagcccgac
cacggtgtcgacgacatcgaccacttcggcaaccgtcggctgcgcaccgtcggcgagctg
atccagaaccagatccgcgtcggactctcccgcatggagcgcgtcgtccgcgagcggatg
acgacccaggacgtcgaggcgatcacgccgcagaccctgatcaacatccggccggtcgtc
gcctccatcaaggagttcttcggcaccagccagctgtcccagttcatggaccagaccaac
ccgctcgcgggcctgacccacaagcgccgcctgtcggcgctgggcccgggtggtctgtcc
cgtgagcgggccggcatggaggtccgcgacgtgcacccgagccactacggccggatgtgc
ccgatcgagacgccggagggcccgaacatcggtctgatcggctcgctgtcggcctacggg
cgggtcaacgccttcggcttcatcgagaccccgtaccgccgggtccagaacggtgtcgtc
accgacacgatcgactacctgaccgccgacgaggaggaccgcttcgtcgtcgcccaggcc
aactcgccgctggacgcccagggccggttcgccgaggaccgcgtcctggtccgcaccaag
ggcggtgaggtcgactacctcgtcccggagaacgtcgactacatggacgtctcgccgcgg
cagatgacctcggtcgcgacggcgatgatcccgttcctcgagcacgacgacgccaaccgc
gcgctcatgggcgcgaacatgcagcgtcaggccgtccccctgctgcgcagcgaggcgccg
ctggtcggcaccggtatggagctgcgtgccgccgtcgacgcaggcgacgtcgtcgtggcg
gagaaggccggtgtggtcgaggactccaccgccgactacgtcaccgtcatggccgacgac
ggcacccggcagacctaccggctgctgaagttccgccgctcgaaccagggcacctcgatc
aaccagactcccgtcgtcgacgaggggcagcgggtcgaggtcggccaggtcatcgccgac
gggccgtgcaccgacgagggcgagatggcgctgggcaagaacctgctcgtcgccttcatg
ccgtgggagggccacaactacgaggacgcgatcatcctgtcgcagcgcctcgtgcaggac
gacgtcctgtcctcgatccacatcgaggagttcgaggtcgacgcgcgtgacaccaagctc
ggtgccgaggagatcacccgggacatcccgaacgtctccgaggaggtcctcgccgacctc
gacgagcgcggcatcatccgcatcggcgccgaggtcgtgcccggcgacatcctcgtcggc
aaggtcacgcccaagggcgagaccgagctgacccccgaggagcggctgctgcgggcgatc
ttcggtgagaaggcccgtgaggtccgcgacaccagcctcaaggtcaagcacggtgagtcc
ggcaaggtgatcggcgtccgcgtgttctcccgcgaggacggcgacgagctgcccgccggc
gtcaacgagctgatccgggtctacgtcgcccagatgcgcaagatctccgacggcgacaag
ctcgccgggcgccacggcaacaagggcgtcatcgcgaagatcctgccgcaggaggacatg
ccgttcctcgaggacggcaccccggtggacatcgtgctgaacccgctgggcgtccccggc
cggatgaacgtcggccaggtcctggagacccacctcgggtgggtcgccaagtccggctgg
caggtcgagggcaccccggagtgggcggtcaacctccccgaccccgcgcgtgccgccggc
ccgggcacccggacggcgacgccggtgttcgacggcgcccgcgaggaggagatcgtcggc
ctgctcggctcgacgatcccgaaccgcgacggcaaccggatggtgcagcccaccggcaag
gcgcggctgttcgacggccgctccggggagcccttccccgaggcgatctcggtcggctac
gtctacatcctgaagctgctgcacctggtcgacgacaagatccacgcccggtcgaccggc
ccgtactcgatgatcactcagcagccgctgggtggtaaggcacagttcggtggccagcgc
ttcggtgagatggagtgctgggcgatgcaggcctacggcgcggcctacgcgctgcaggag
ctgctcaccatcaagtccgacgacatcctcggccgcgtcaaggtgtacgaggcgatcgtc
aagggcgagaacatccccgagccgggcatcccggagtcgttcaaggtgttgctcaaggag
ctgcagtcgctctgcctgaacgtggaggtcctctccggcgacggccaggcgatcgagctg
cgcgacaccgacgacgaggtcttccgggccgcggaggagctgggcatcgacctgtcccgc
cgcgagccgtcgtccgtcgaggacgtgtga
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