Gordonia sp. YC-JH1: CXX93_03935
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Entry
CXX93_03935 CDS
T05256
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
goc
Gordonia sp. YC-JH1
Pathway
goc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
goc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CXX93_03935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
goc03400
]
CXX93_03935
Enzymes [BR:
goc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CXX93_03935
DNA repair and recombination proteins [BR:
goc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CXX93_03935
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RimP_N
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AUH67648
LinkDB
All DBs
Position
complement(846617..848581)
Genome browser
AA seq
654 aa
AA seq
DB search
MTRSHLDVDGRRIVLTNLEKVLYPETGTRKFDVVDYYIRIADAMVPHMASRPVTRKRWPG
GVESAPFFEKTLPAGAPDWVARFTIEHSERRTVYPVVRSAADLVWLAQVAALELHVPQWR
IDLSDDEERRTDRIVLDLDPGPGVTLDDCAAVALDIRAMLTDAGLESFPVTSGSKGIHVY
GRLASPVRSESARTVARQIATALAQAHPRTVTATMAKAERERRVFIDWSQNTAAKTTLAP
YSLRGRERPWVAAPRSWDELSESGLAHLLCTEVLDRYENDGDLLAGLSEASPPVQTTTVP
GDAVVDLGEYRKKRSSRSRRESVAPPPRESAPARDSEVDDPLPGLVGLRPMLATDDPIES
LTDDWAYEGKWDGFRALIRVVGGRVRLISRSGNDLTGDFPELSVFGDLLVSGGRPVDAVL
DGEIVAINDAGLTDFSLLASRRRRAEPHELRVHLFDVLYLDGVRVWEQPWEVRREILESL
DYFDGEPLIDVPPLLPGPAETAIRTARDRGWEGVIAKRRASSYASGRRSPDWRKQKNWND
IEVVIGGYRPGRGSESKIGSLLVGLPAERGLRYLGRVGTGFSDAELDALLEELRPLRISM
CPFIDDIDKPVAGSATWVLPKIVADVQFMDWTSTGHLRHPSWRGIRRDKLPGDL
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgacgcgatcgcatctcgacgtggacgggcgcaggattgtgctgaccaacctcgagaag
gtgttgtatccggagaccgggacccgcaagttcgacgtcgtcgactactacatccggatc
gctgacgcgatggtgccgcacatggcctcgcgcccggtgacccgcaaacgctggccgggc
ggagtcgagtcggcgccgttcttcgagaagaccctccccgcaggcgcacccgactgggtg
gcccgcttcacgatcgagcactccgagcgccggacggtgtacccggtggtccggtcggct
gccgatctggtgtggctggcccaggtggccgcgctggagctccacgtgccgcagtggcgc
atcgacctgtccgacgacgaggagcgccgcaccgaccgcatcgtgctcgacctcgatccc
gggcccggcgtgacactggacgactgcgccgccgtggccctcgacatccgcgccatgctg
accgacgccggtctcgagtcgttcccggtcaccagcggttccaaggggattcacgtctac
gggcgcctcgcatcgcccgtgcggtccgaatcggcgcgcaccgtggcccgccagatcgcg
accgccctggcgcaggcgcacccccgcaccgtcaccgcgaccatggcgaaagccgagcgc
gagcgccgggtcttcatcgactggagccagaacaccgccgccaagacgacactcgcgccg
tactcgctgcgtggacgcgagcggccgtgggtcgcggcgccgcggtcgtgggacgaactg
tccgagtccggactcgcccatctgctctgcaccgaggtcctcgaccgctacgagaacgac
ggcgatctgctcgccggactgtcggaggcgagcccgccggtccagacgaccaccgttccc
ggcgacgcggtcgtcgacctcggcgagtatcggaagaaacggtcctcacgctctcggagg
gagagcgtcgcgccgcctccgcgagagagtgcgcccgcccgcgacagcgaggtcgacgat
ccgctgcccggtctcgtcggactccgcccgatgctcgccaccgacgacccgatcgagtcc
ctgaccgacgactgggcgtacgagggcaagtgggacggtttccgggcactgatcagggtg
gtgggcggccgggtccggttgatctcgaggtcgggcaacgacctcaccggcgacttcccg
gaactgtccgtgttcggtgacctcctggtctccggcggccgaccggtcgacgccgtgctc
gacggtgagatcgtcgcgatcaacgacgccgggctcaccgacttctcgctgctcgcatcg
cggaggcgcagagccgagccgcacgagctccgggtgcacctcttcgacgtcctgtacctg
gacggcgtccgagtgtgggagcagccgtgggaggtgcggcgcgagatcctggagtccctc
gactacttcgacggcgaaccgctgatcgatgtgccgccgctgcttcccgggccggcggag
accgcgatccgcaccgcacgggaccgggggtgggaaggggtcatcgcgaaacggcgggct
tcgtcctacgcgagcggacgccgcagccccgactggcgcaaacagaagaactggaacgac
atcgaagtggtgatcggcggctatcggcccggtcgcggctccgagtcgaagatcggatca
ctgctggtcggcctgcccgccgagcgcggcctgcgctacctcggccgggtgggcaccggt
ttcagcgacgccgaactcgacgcactgctcgaagaactccggcccctgcggatcagcatg
tgcccgttcatcgacgacatcgacaagcccgtcgcgggcagcgcgacgtgggtgctgccg
aagatcgtcgcggacgtgcagttcatggactggacgtcaacggggcacctgcgccatccg
agttggcgcggaatccgccgtgacaagctgccgggcgacctgtga
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